Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30225g00041 ATGGGAATACGTGATTCGGTGACTGTCTTTTTAGTTATATGGCGACTCATGAGTCAAGACTACTCCTCTCTCTCCGTGGAGAAAGCTGAACAAGATGTCATTATTTCAAAAAATGGCAAGTTCTCCGCCGGCTTCCTCAAAGTTGGGGATAATGCATTCTCCTTTGCAATATGGTTCACCACAAAGCCTGATTCCCAAACCACTGCAACTCCTACTACTGTTTGGATGGCAAATCGGGACCAACCTGTGAATGGAAAGCGCTCAACGCTTTCCCTCTCGCACACTGGCAATCTTGTTTTGTTAGATGCTGGTCAGTTCCAAACATGGTCTTCTGAGACGGAGTCATCTGGACCAACAGAGTTACACCTTGGAAATGATGGCAATCTTATTCTACAAGAGTTAAAAGGAAATGGAAATATTCTGTGGCAAAGTTTTCATTTCCCAACGGACACTCTTCTTCCCGGACAACATCTTACCAGAAGTATAAAATTAGTTTCATCAAGAGCAGAGGGTAACCATTCCTCTGGTTTCTATAAGTTGTCCTTTGATGATAGTAACGTTCTTACCCTTCTTTACGATGGCCCTGACGTGTCAAGCATTTATTGGCCCCCTCCTGAGCTATTAGTTTGGCAAGCTGCAAGGTTTACTTACAATAGTAGCAGAACTGCGGTGCTAAATTCTCTGGGATATTTCAGTTCATCCGATGATTATAGCGTGACAACATCGGATTATGGCATTGCACTGCCTAGAAGGTTAACAATTGATCATGATGGAAATCTTCGAGTGTACAGTCAAGATCTATCACAAAAATGGTACGTCTCATGGCAAGCAATTTCTGACGGTTGCAGCATTCATGGGATTTGTGGTGCTAATAGTGTTTGCAGTTTTGATCCCAAAAAGGGAAGGAAGTGCTCATGTGTTCCTGGGTACAAAGTAAAGATTCAAAGTGATTGGTCTTATGGGTGTGAACCCATGTTTGCTGCTACGTGTAAACAAAGTGACTTTACTTTCTTGGAATTGAACAATGTTAAGTTCTATGGCTATGATTACAATTACACGGCCAATTGTACCTACAGTGCTTGTACAAGTTTGTGCCTGAGTGATTGTCAATGCAAAGGGTTCATGTATTTGTACAACAAAGATAGTGGCTATTTCAGCTGCTTCACAAAAATACAGTTGCTCAACGGAGAACATTCTTCAAGAGTATCGGGATATACAGCCTACTTGAAGGTACCCAAGTCAAAGAGCTTCCAAACCAGTCATGGAGAATCAGTCGTCAGAAACAGTGGTGGTCCTGTGAAAAAACATGTAAGCCATTTCATGAGCTTCCTTTTGTGGTTTGCCGCGGCAGTTGGAGTTCTTGAAATGGGTTGCATTTTTGTTGTTTGGTTCTTAATCAAGAGCCAACACAATTCTCGAATACATCAACATGACCATCAGCTTGCAACAATAGGATTCAGAAAATTTAGCTACTCTGAGCTAAAAAAAGCTACAAAAGGATTCAGCCAAGAGATTGGAAGGGGTGCAGGAGCCATTGTATACAAAGCTCTATTTTCGGATCAAAGAATTGCAGCAGTAAAGAGACTCAAGGATGCTAAGCAAGGAGAAGGTGAATTCCTCGCGGAAGTGAGCATCATTGGAAGGCTCAACCACATGAACTTGATTAAAATGTGGGGTTATTGCGCTGAGGGAAAGCATCGACTGTTGGTTTATGAGTACATGGAAAATGGTTCTTTGGCAGATAACCTCTCATCCAATACACTTGATTGGAGCAAGAGGTATAACATTGCTCTGGGAACAGCAAGAGGCTTGGCATATTTACATGAAGAATGTTTGGAATGGATTTTGCACTGTGATATAAAACCTCAAAATATTCTCTTGGATTCAGATTATCAACCCAAGGTTGCAGATTTCGGATTGTCCAAGTTATTGAACAGAGATGATCACAACAACAATCCAAATTTCTCAATGATAAGAGGAACCAGAGGGTATATGGCACCTGAGTGGGTTTTCAACCTAGCAATCACTTCCAAAGTGGATGTTTATAGCTACGGAATTGTTCTCCTGGAGATGATAACCGGAAAGAATCCAGCAGCAGATATTCAAGCAAATAATGGAGAAGAAGCATACAATGGGAGGCTAGTAACATGGGTGAGAGACAAAAAGAAAGAATGTGCATCTTGGGTGGAGCAAATCATGGATTCCGCAATAGGGTCAAATTATGATGAGAAGAAGATGGAAATTTTGGCTAGAGTGGCTTTGGATTGCATAGAAGAGGACAAAGAAGGAAGGCCTTCCATGAAACAAGTGGTTGAAATGCTCCAAAGCCACGCCTGGGATCCTAATGGTGGAGCATGA 2358 0.4173 MGIRDSVTVFLVIWRLMSQDYSSLSVEKAEQDVIISKNGKFSAGFLKVGDNAFSFAIWFTTKPDSQTTATPTTVWMANRDQPVNGKRSTLSLSHTGNLVLLDAGQFQTWSSETESSGPTELHLGNDGNLILQELKGNGNILWQSFHFPTDTLLPGQHLTRSIKLVSSRAEGNHSSGFYKLSFDDSNVLTLLYDGPDVSSIYWPPPELLVWQAARFTYNSSRTAVLNSLGYFSSSDDYSVTTSDYGIALPRRLTIDHDGNLRVYSQDLSQKWYVSWQAISDGCSIHGICGANSVCSFDPKKGRKCSCVPGYKVKIQSDWSYGCEPMFAATCKQSDFTFLELNNVKFYGYDYNYTANCTYSACTSLCLSDCQCKGFMYLYNKDSGYFSCFTKIQLLNGEHSSRVSGYTAYLKVPKSKSFQTSHGESVVRNSGGPVKKHVSHFMSFLLWFAAAVGVLEMGCIFVVWFLIKSQHNSRIHQHDHQLATIGFRKFSYSELKKATKGFSQEIGRGAGAIVYKALFSDQRIAAVKRLKDAKQGEGEFLAEVSIIGRLNHMNLIKMWGYCAEGKHRLLVYEYMENGSLADNLSSNTLDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKLLNRDDHNNNPNFSMIRGTRGYMAPEWVFNLAITSKVDVYSYGIVLLEMITGKNPAADIQANNGEEAYNGRLVTWVRDKKKECASWVEQIMDSAIGSNYDEKKMEILARVALDCIEEDKEGRPSMKQVVEMLQSHAWDPNGGA 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30225g00041 785 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 202 IPR036426 -
Stsc30225g00041 785 Pfam S-locus glycoprotein domain 210 313 IPR000858 GO:0048544
Stsc30225g00041 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Stsc30225g00041 785 SMART serkin_6 499 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30225g00041 785 Gene3D - 25 147 IPR036426 -
Stsc30225g00041 785 ProSiteProfiles Protein kinase domain profile. 499 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30225g00041 785 CDD STKc_IRAK 505 775 - -
Stsc30225g00041 785 ProSiteProfiles PAN/Apple domain profile. 330 413 IPR003609 -
Stsc30225g00041 785 Pfam D-mannose binding lectin 72 162 IPR001480 -
Stsc30225g00041 785 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Stsc30225g00041 785 PANTHER OS07G0415500 PROTEIN 18 776 - -
Stsc30225g00041 785 SUPERFAMILY Protein kinase-like (PK-like) 476 775 IPR011009 -
Stsc30225g00041 785 Gene3D - 148 274 IPR036426 -
Stsc30225g00041 785 FunFam Serine/threonine-protein kinase 574 781 - -
Stsc30225g00041 785 ProSiteProfiles Bulb-type lectin domain profile. 19 144 IPR001480 -
Stsc30225g00041 785 Gene3D Hepatocyte Growth Factor 339 411 - -
Stsc30225g00041 785 SMART blect_4 25 148 IPR001480 -
Stsc30225g00041 785 Gene3D Phosphorylase Kinase; domain 1 464 573 - -
Stsc30225g00041 785 Pfam Protein kinase domain 502 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30225g00041 785 FunFam S-receptor-like serine/threonine-protein kinase 468 573 - -
Stsc30225g00041 785 CDD PAN_AP_plant 329 412 - -
Stsc30225g00041 785 PIRSF SRK 6 782 IPR024171 GO:0004674
Stsc30225g00041 785 Gene3D Transferase(Phosphotransferase) domain 1 574 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30225g00041 Stsc-Chr30225 183967 186840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30225g00041 401 784 Receptor kinase-like Gene Family AT5G45780 36.616 5.71e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc30225g00041 Pkinase 4.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30225g00041 - - aip:107625486 1177.54