Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30225g00030 ATGTCTGCAAAACTTGAAGGCAGAGCTTTTCTCTCTTCCTTTGTTGATGCTGCTTTGCATAAGCTGTCTTCTGTCAACTCAATCCCTTCAAGGAAGCCAGATGAAAAGAAGTTGCTTGGGAGGCTGAGAGCAACTCTACGTGCTGTTCTACCTTTTCTTGATGATGCTGAGCAGAAGCAGTTCAAAGACCATGAAGTCAAGAACTGGCTTGTTAATCTCCAGGATGCTCTCTATATGGCTGATGACTTGCTCGATGAACTCTCCACTAAAGCTGCTGTTGCCGCTCTCACTCAAACGGATCCACCAGTTAATTCTTCTTCTTCCTGGTCTCATTATGTTGATGATATCTTGGAAGATAGTAATTATGAGTTGGAGCACATAGTTGTTACACTGAAGTCTCTTGTTGATGAGAAAGATGAGTTGCCTCTAGAAAAGGCTGCAAGAGATCTAGAGGACATGTCATGGAGAAATCAGACCACCTCACTGCTTGAAGGTTCTGATATTTATGGGAGGGACAAAGAGAAGGAGGAGATAATAGGAATGCTGTTAGATGATACTTGTCATGGAAAACTTTCTGTCATCTCTATAGAAGGTATGGGGGGAGTTGGAAAAACTACTTTGGCTCAGCTGGTATACGATGATGCTGGAGTGAAGGCAAAATATGATATTAGAGCATGGGTTTGTGTTGCTACAAAGTTTGATCCAGTTAATGTTACAAAAGCTATTATAGAGGAAGTAGATTCTTCTTCTCCCTGTCATAATGTTAGCTTGAATTCCCTCCAAACTGAATTGAAGCAAAAGTTATCAGGAAAATCCTTCTTAATTGTTTTAGATGATATGTGGGACAATCAACAAAATTTGTGGGACAATTTTTTAAAACCTTTTCTACCCGAGAATAAAGGAAGTAAAATTCTTTTAACAACCCGCAATAAAAATGTTGATTCTTTGCTGTCAACCACTAATTTTCATTGCAACTTACATCCATTGTCTGATGAAGATGGCTGGTCAATGTTTTTGAAACATTCATCTCTTTCTACCAATGATAGTCAATATAAAACTCTAGAATCAATTGGTAGAAAAATTGTGGAGAAGTGTAAGGGGTTACCTTTCGCTGTGAAGACCTTGGGGGGTTTATTACGAAACGATTCTAATGAAAGGGACTGGAATAACATATTGGAAAGTAGAATCTGA 1191 0.3887 MSAKLEGRAFLSSFVDAALHKLSSVNSIPSRKPDEKKLLGRLRATLRAVLPFLDDAEQKQFKDHEVKNWLVNLQDALYMADDLLDELSTKAAVAALTQTDPPVNSSSSWSHYVDDILEDSNYELEHIVVTLKSLVDEKDELPLEKAARDLEDMSWRNQTTSLLEGSDIYGRDKEKEEIIGMLLDDTCHGKLSVISIEGMGGVGKTTLAQLVYDDAGVKAKYDIRAWVCVATKFDPVNVTKAIIEEVDSSSPCHNVSLNSLQTELKQKLSGKSFLIVLDDMWDNQQNLWDNFLKPFLPENKGSKILLTTRNKNVDSLLSTTNFHCNLHPLSDEDGWSMFLKHSSLSTNDSQYKTLESIGRKIVEKCKGLPFAVKTLGGLLRNDSNERDWNNILESRI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30225g00030 396 Gene3D - 146 322 IPR027417 -
Stsc30225g00030 396 Pfam NB-ARC domain 172 393 IPR002182 GO:0043531
Stsc30225g00030 396 Gene3D - 328 395 IPR042197 -
Stsc30225g00030 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 394 IPR027417 -
Stsc30225g00030 396 Gene3D - 30 134 - -
Stsc30225g00030 396 Pfam Rx N-terminal domain 14 93 IPR041118 -
Stsc30225g00030 396 FunFam Probable disease resistance protein At1g61300 153 320 - -
Stsc30225g00030 396 PRINTS Disease resistance protein signature 365 379 - -
Stsc30225g00030 396 PRINTS Disease resistance protein signature 267 281 - -
Stsc30225g00030 396 PRINTS Disease resistance protein signature 193 208 - -
Stsc30225g00030 396 PANTHER DISEASE RESISTANCE PROTEIN RP 55 394 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30225g00030 Stsc-Chr30225 145818 147008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30225g00030 163 376 WRKY Transcription Factor Family AT5G45050 26.147 1.51e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30225g00030 - - aip:107628003 521.546