Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30225g00012 ATGGATTCAAATTCGCTTCACAGTTTTCAACTTGAACAGCAACAACAGCAACAACTCAGCAGTTCTGGTTTGCTTCGTTATCGCTCTGCGCCGAGTTCGCTTCTTGCGAATCTCACGCCAACTCTCACTGAATCCCAGGCCTTGCTCTCCAGATTCGTGAATAGCAATAGCAATAGAAGTAGTAGCAATAACAATAATACCAAAACCGACACCGTTTCACGTACCTTCCAAGATTCAAACACAAACGATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCGGGAGGGAACGGATATGGTGGTGGTGTTGGATTGCCACCTCACTATCCAAGAAACAGTTCTTCTTCTTCTTCATCTTCTTCTTGTTCGTCTTCAATGGAGGGGTCTTATGGATTGGTTATGGGTTCAGTTGGAATGGAAGAAAAAGGCTTTGGCGTTTCTTCTTCAAATCTTCTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAACATTTCATTACAAAATGGATTTACCTCTATGAAAGGTGTTGGAAACTACGGTCCTGTTAACGGCACCAACGAAGAACTTAGTCCATCAATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACTGCTTCTTCCTTGGGAATGTTGTCACAGATCTCCGAAATAGGGAACGATGAAATCGGGGCAACTAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAACGGTGACGCTTCCCGTTATAGCTCCAGATTCTCCTATGGTTCTTGGAATGATGCACCACAACTCCTGGAAAATTTCAGTGGCTTGAAAAGAGGGCGAAATAGCAATGAAAAGTTGTTATCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACCTGAGCTTGCCTAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCTAAGCGAGGCTGCGCTACTCATCCCCGGAGCATAGCCGAAAGGGTTCGAAGAACACGGATCAGCGAACGAATGAGGAAATTGCAAGAGCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCCGTTGATTACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAGAAGGGCAAATTGCAAATGTATAAGCATGCTGAGAGCAGATACAAATCAAATTGCTTAA 1230 0.4398 MDSNSLHSFQLEQQQQQQLSSSGLLRYRSAPSSLLANLTPTLTESQALLSRFVNSNSNRSSSNNNNTKTDTVSRTFQDSNTNDKGCDSKGLRRMNSGGNGYGGGVGLPPHYPRNSSSSSSSSSCSSSMEGSYGLVMGSVGMEEKGFGVSSSNLLRQSSSPAGLFSNISLQNGFTSMKGVGNYGPVNGTNEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNDEIGATSPEDGRQGGSNGDASRYSSRFSYGSWNDAPQLLENFSGLKRGRNSNEKLLSDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKNLSERRANCKCISMLRADTNQIA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30225g00012 409 FunFam Transcription factor bHLH130 family 332 400 - -
Stsc30225g00012 409 MobiDBLite consensus disorder prediction 53 84 - -
Stsc30225g00012 409 Gene3D - 332 402 IPR036638 GO:0046983
Stsc30225g00012 409 MobiDBLite consensus disorder prediction 53 125 - -
Stsc30225g00012 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 381 IPR011598 GO:0046983
Stsc30225g00012 409 MobiDBLite consensus disorder prediction 225 244 - -
Stsc30225g00012 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 395 IPR036638 GO:0046983
Stsc30225g00012 409 Pfam Helix-loop-helix DNA-binding domain 336 382 IPR011598 GO:0046983
Stsc30225g00012 409 SMART finulus 337 387 IPR011598 GO:0046983
Stsc30225g00012 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 397 - -
Stsc30225g00012 409 MobiDBLite consensus disorder prediction 111 125 - -
Stsc30225g00012 409 Coils Coil 371 398 - -
Stsc30225g00012 409 CDD bHLH_AtbHLH_like 336 389 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30225g00012 Stsc-Chr30225 60793 63874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30225g00012 22 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.059 7.15e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30225g00012 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30225g00012 - - aip:107625483 615.15