Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30225g00005 ATGAGTGTTTGCTTTCCTTTTAGTCAGTCTTCAATAAGTGCTGTTGTCTTGAAGGGTCGTACTCCCCTGTTGATGAGCAGTAACGTCTATGGTCTTTGCTCTCAAGGAATATCCAGTTCATATTCTTCCAGTTTGTGCCCTTTGCAGCTGGAGATAAATCATGTTGGTCTTTCTTATTGCACAAGATCTGCTATGGGCCAAACAATAAGAAGTTACCTTGGACCATGCTGCTCCAAGCAAAAGGGAAACCTTCAAATTAGTAGTTCTATAGCACATCAGAAGAGGCATCATGAAATTTCATTGGCATGCCAAAGTTTGAATATGAGGATTTTTGTACCTAAACAAAAAAAGCTTCCCAAAGTTAAGTGTAGTGTAGGACCGGTATCTTGGCCGCGTGGATGTGCATCAGTTGGCTTGATACTTGGATTACTTGTATGCAATTTAAGCTCTGAACCTGTATATGCTGACACAGATCCTGAAAATGGAAGAAGAAATGATCAAAACATGTGTGAATCAAATGAAATGTTATCGCATGGGAAGAAAGTTTACACTGACTATTCTGTAATTGGAATACCTGGGGATGGAAGATGTTTATTCCGCTCTGTTGCTCATGGGGCTTGCTTGAGGTCTGGAAAGGCTCCTCCCAGTGAAAGCCATCAGAGAGAATTGGCAGATGAATTACGCAACAAAGTTGCGGATGAGTTTATCAAAAGAAGGGAAGAGACCGAATGGTTTATTGAAGGTGATTTTGATACATATATTTCTCAAATAAGGAAGCCTCATGTTTGGGGAGGTGAGCCTGAATTGTTCATTGCTTCACATGTCTTGAAGATGCCAATCACAGTGTACATGTATGATAGGGATGCTGGTGGCTTGATATCAATTGCTGAGTATGGCCAAGAATATGGGAAGGAGAATCCAATTAGAGTTCTCTACCATGGATTTGGTCATTATGATGCACTGGAGATCCCTAGAAGGAAGGGTCCTAAACCAAGGCTGTAA 1002 0.4112 MSVCFPFSQSSISAVVLKGRTPLLMSSNVYGLCSQGISSSYSSSLCPLQLEINHVGLSYCTRSAMGQTIRSYLGPCCSKQKGNLQISSSIAHQKRHHEISLACQSLNMRIFVPKQKKLPKVKCSVGPVSWPRGCASVGLILGLLVCNLSSEPVYADTDPENGRRNDQNMCESNEMLSHGKKVYTDYSVIGIPGDGRCLFRSVAHGACLRSGKAPPSESHQRELADELRNKVADEFIKRREETEWFIEGDFDTYISQIRKPHVWGGEPELFIASHVLKMPITVYMYDRDAGGLISIAEYGQEYGKENPIRVLYHGFGHYDALEIPRRKGPKPRL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30225g00005 333 Gene3D - 168 328 - -
Stsc30225g00005 333 Pfam OTU-like cysteine protease 192 318 IPR003323 -
Stsc30225g00005 333 CDD OTU_plant_OTU4-like 185 321 - -
Stsc30225g00005 333 ProSiteProfiles OTU domain profile. 186 324 IPR003323 -
Stsc30225g00005 333 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 148 323 - -
Stsc30225g00005 333 FunFam OTU domain-containing protein 170 328 - -
Stsc30225g00005 333 SUPERFAMILY Cysteine proteinases 185 321 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30225g00005 Stsc-Chr30225 18405 22198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30225g00005 191 330 C2H2 Transcription Factor Family AT1G50670 27.660 4.80e-06 45.1