Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30224g00027 ATGGGAAGACCTCCATGCTGTGACAAAGTTGGAATCAAGAAAGGTCCATGGACACCTGAGGAAGATATCATCCTTGTATCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTCCCTACTAACACTGGGTTATCAAGATGCAGCAAAAGTTGTAGGCTAAGATGGACAAATTATCTAAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCATGAAGAAGGCATGATTATTCACTTGCAAGCTCTTCTTGGTAACAA 263 0.4259 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGN 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30224g00027 87 FunFam MYB-related transcription factor 13 66 - -
Stsc30224g00027 87 CDD SANT 16 61 IPR001005 -
Stsc30224g00027 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc30224g00027 87 SUPERFAMILY Homeodomain-like 15 87 IPR009057 -
Stsc30224g00027 87 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30224g00027 87 Gene3D - 13 66 - -
Stsc30224g00027 87 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 87 - -
Stsc30224g00027 87 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30224g00027 87 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30224g00027 Stsc-Chr30224 268153 268613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30224g00027 1 87 MYB Transcription Factor Family AT5G62470 89.655 6.78e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30224g00027 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30224g00027 K09422 - gmx:100817854 194.512