Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30224g00012 ATGATGATGAGCTCACAGCACTTCAACAATGGTGGTAGTGATGGTGGTAGGTTCTTTCCTTCACTCCCAGTTCCTCCTCCTTCTTTTCCCCTTGTTGTTCCTCCTCCTCCTCTGTCCAACACTTCAGGGGTTGTTATGATGGGTCGTCATCATCATCATCATGGAAATGGGGTAGAGGATCCTGAACTAAGGATGATGGGGCTTCAGATTTTGAGCCATTCAAAGTGGAGAAAGGGAACCAACAACAACAACTACGGTGAAAACAAGAGCTTGTCTTTGAAGATTGGCGATGAGGAAGTTGAGATAGATGGAGGAGAAGAAGAAGAAGAAAGAGAAGAAGGTAATAATAAAGGGCCTTGCTCTTCTTCTTCTAATGGAGGAAAAAATAACGGTCATGTCAAACTCTGTGCCAGAGGCCATTGGAGACCTGCTGAAGATGCACAACTTAAGGCACTTGTTGCTCAATATGGCCCTCAAAACTGGAACTTGATTGCAGAACATCTCAAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAGAGCTTTCTGTGAAGAGGAAGAGGAGAGGCTGTTAACAGCACACAAAATGTATGGTAACAAATGGGCCATGATTGCAAGACTGTTCCCTGGGAGAACAGATAATGCAGTCAAGAATCATTGGCATGTAATCATGGCTAGGAAGCAGAGAGAGCAATCAAGCATGTATAGAAGGAGAAAACCTCCTGTTTTCTCTCCTCCTCCTTCTGCTAATGAAGAAGCTGCTGGTGCTGGTGTTGTTCTTCCTCCTCCTAAGGGTTTGGAATTGACTCTCTCTTCAAACAATAATAATAATAATAATAATAATAATAATGTAGCCAGTGATGATCAGTTAACTATCTCAGATGAATCTGTCTCAACAACTTCCACTGATACATTTTTTCATAAGCTTGCTCGACGTCAACATTGTCATGCCAATGCATCACTAATTGGTGTTGGTGGAGCAGTGAATGTGGGTTATGAGAAATTCTATGGTGGTTGGAACAATGGAAGAAGTGAGGCTGTGGGAAAACTTAAGAGTGTGGACCAATCCAATGTTTCAGAATCAAATAACTCATCATCAGAAGTCTCAGTATCTGAGTCAGTAGGCACCACCAATAGGTCCTATCTCTCAATTTCTGGAGAAAGTGTAAAGCACAACAAGATTAACAACAACAACATGCCAGCATTCATTGATTTTCTTGGGGTTGGAGCTACATGA 1269 0.4216 MMMSSQHFNNGGSDGGRFFPSLPVPPPSFPLVVPPPPLSNTSGVVMMGRHHHHHGNGVEDPELRMMGLQILSHSKWRKGTNNNNYGENKSLSLKIGDEEVEIDGGEEEEEREEGNNKGPCSSSSNGGKNNGHVKLCARGHWRPAEDAQLKALVAQYGPQNWNLIAEHLKGRSGKSCRLRWFNQLDPRINRRAFCEEEEERLLTAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQREQSSMYRRRKPPVFSPPPSANEEAAGAGVVLPPPKGLELTLSSNNNNNNNNNNNVASDDQLTISDESVSTTSTDTFFHKLARRQHCHANASLIGVGGAVNVGYEKFYGGWNNGRSEAVGKLKSVDQSNVSESNNSSSEVSVSESVGTTNRSYLSISGESVKHNKINNNNMPAFIDFLGVGAT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30224g00012 422 Gene3D - 192 250 - -
Stsc30224g00012 422 Coils Coil 419 422 - -
Stsc30224g00012 422 SMART sant 189 237 IPR001005 -
Stsc30224g00012 422 SMART sant 137 186 IPR001005 -
Stsc30224g00012 422 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30224g00012 422 ProSiteProfiles Myb-like domain profile. 138 184 IPR001005 -
Stsc30224g00012 422 MobiDBLite consensus disorder prediction 242 298 - -
Stsc30224g00012 422 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Stsc30224g00012 422 SUPERFAMILY Homeodomain-like 138 231 IPR009057 -
Stsc30224g00012 422 MobiDBLite consensus disorder prediction 96 131 - -
Stsc30224g00012 422 FunFam MYB transcription factor 138 189 - -
Stsc30224g00012 422 PANTHER MYB PROTEIN-RELATED 130 296 - -
Stsc30224g00012 422 FunFam MYB transcription factor 191 258 - -
Stsc30224g00012 422 MobiDBLite consensus disorder prediction 278 298 - -
Stsc30224g00012 422 CDD SANT 141 182 IPR001005 -
Stsc30224g00012 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 184 IPR017930 -
Stsc30224g00012 422 Pfam Myb-like DNA-binding domain 138 184 IPR001005 -
Stsc30224g00012 422 Pfam Myb-like DNA-binding domain 191 233 IPR001005 -
Stsc30224g00012 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 239 IPR017930 -
Stsc30224g00012 422 CDD SANT 195 232 IPR001005 -
Stsc30224g00012 422 Gene3D - 138 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30224g00012 Stsc-Chr30224 130569 132797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30224g00012 111 258 MYB Transcription Factor Family AT1G69560 67.702 7.37e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30224g00012 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30224g00012 K09422 - gmx:100776882 289.271