Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30224g00010 ATGGAAGAGCAAGGGCAGCAACAACAACACCACCAAGACCCAAACAGAAGCCATGGTCATACCCATGGTGCTGCTGCTGGTGGTTCTTCCTCTTCCTCTGAGAAACAGACCGAACCGGTCCGGTCTAGGTGGACACCCAAACCGGAGCAAATACTTATTCTCGAATCCATCTTCAACAGCGGCATGGTTAACCCTCCAAAAGACGAGACCGTCAGGATAAGGAAGCTTCTAGAGAAGTTCGGCGCTGTCGGCGACGCAAACGTCTTCTACTGGTTTCAAAACCGTAGGTCCAGATCTCGTCGCCGACAGCGCCAGATGCAGCAGCAACAGCAACAACAGCAACACCAACACCAGCTCGGCGTTGGTGTTGGTGTTGTTGGCGTTGGTGTTGGTGGTGCAATTCAGTGTGATCAGGGTCACGCTGGTCCACCTGCACCTTCAGCGGTAGTGGGAAGTGCTTTGGGTTTCGGTGATTCCTCTTCTTGTTCTTATCAACTCCCTCCTCCTCCTCCTGTTGCTGGTGGCGGTTCTTCTTCTTCTTCATCTTCTTTCGGTGGTGAGCAAGAAGCCATGGATAACTTCTTCTCTTCTGTTGCTACTCATCCTCATCATCATCCTTCTCAAATGGGGTTCCAGGAAATTGATCACACCTCATCTTTGTTCCCTCATGTTCCTCCAAATTTCACCTACAACTCTGGATTCATCACAGTGTTCATCAATGGAATTGCAACAGAAGTTCCAAGAGGTCTTATTGACATCAAAACATTGTTTGGTGAAGATGCAATTCTAGTTCATTCTTCTGGAGTGCCAGTTCCAACCAATGAGTTTGGCTTCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTACTTTCTGGTTCCGAAGCCAACATAA 891 0.4882 MEEQGQQQQHHQDPNRSHGHTHGAAAGGSSSSSEKQTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMQQQQQQQQHQHQLGVGVGVVGVGVGGAIQCDQGHAGPPAPSAVVGSALGFGDSSSCSYQLPPPPPVAGGGSSSSSSSFGGEQEAMDNFFSSVATHPHHHPSQMGFQEIDHTSSLFPHVPPNFTYNSGFITVFINGIATEVPRGLIDIKTLFGEDAILVHSSGVPVPTNEFGFLMQSLQHGESYFLVPKPT 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30224g00010 296 Pfam Homeodomain 41 101 IPR001356 GO:0003677
Stsc30224g00010 296 SMART HOX_1 39 106 IPR001356 GO:0003677
Stsc30224g00010 296 FunFam WUSCHEL-related homeobox 11 41 108 - -
Stsc30224g00010 296 MobiDBLite consensus disorder prediction 24 39 - -
Stsc30224g00010 296 MobiDBLite consensus disorder prediction 1 46 - -
Stsc30224g00010 296 MobiDBLite consensus disorder prediction 99 118 - -
Stsc30224g00010 296 ProSiteProfiles 'Homeobox' domain profile. 37 102 IPR001356 GO:0003677
Stsc30224g00010 296 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30224g00010 296 MobiDBLite consensus disorder prediction 160 187 - -
Stsc30224g00010 296 Gene3D - 26 120 - -
Stsc30224g00010 296 PANTHER WUSCHEL-RELATED HOMEOBOX 11 13 294 IPR044558 GO:0003700|GO:0048830
Stsc30224g00010 296 MobiDBLite consensus disorder prediction 104 118 - -
Stsc30224g00010 296 SUPERFAMILY Homeodomain-like 34 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30224g00010 Stsc-Chr30224 113461 116765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30224g00010 7 292 Wox Gene Family AT3G03660 50.342 1.38e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc30224g00010 Homeodomain 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30224g00010 - - adu:107494279 387.111