Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00025 ATGTTGTGCTCGGTTTGGGCTTTTGAGCTTGATTGGGAGTTACTCCTAATCATTGGCCTTCAAAAGTTCATCATCATTCTACATTGCAAAGCAAGCAGGGTCATGGAGCTTGAAGCCATTATAAAAGAAGCAGTTGACCTCGAGAACATTCCTCTTGAGGAAGTATTTGATAATCTCAAGTGCACAAGAGAAGGGCTAAAGTCCAAGCATGTACAAGAGAGACTAGACTTGTTTGGATACAATAAACTTGAAGAGAAGAAGGAAAGTAAAATACTCAAGTTTTTGAGTTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCGATGGCACATGGAGGGGGTAAAAGTGGAGATTATCAAGACTTCGCTGGAATAATTATTTTGCTAATTATAAACTCGACCATCAGTTTCATAGAAGAAAACAATGCTGGTAATGCAGCTGCAGCACTTATGGCAAGATTGGCACCAAAGGCAAAGGTACTCCGAGACGGAAAATGGAGCGAAGAAGACGCTGCTGTGTTGGTTCCCGGAGACATAATTAGCATCAAGCTTGGTGACATCGTTCCAGCCGATGCGCGTCTTCTTGAAGGAGATCCTTTGAAAATTGATCAGTCTGCTCTAACCGGAGAATCACTTCCTGTGACAAAAAACCCCGGAGAAGGAGTGTATTCTGGCTCAACATGCAAGCAAGGCGAGATAGAGGCAGTAGTCATTGCCACCGGAGTTCACACTTTCTTTGGAAAAGCAGCTCACCTTGTTGAAAGCACCACACATGTTGGCCATTTCCAGAAGGTTCTAACTTCCATTGGCAACTTCTGCATCTGTTCCATTGCCATTGGGATGCTCATTGAGATCATTGTGATATATGGGATCCAGAGAAGGGAATACAGAGTTGGTATTGATAACCTCCTTGTTCTTCTAATTGGTGGCATCCCCATTGCAATGCCAACTGTCCTTTCTGTTACTATGGCCATTGGTTCACACCGGTTGTCTCAGCAGGGTGCCATAACAAAGAGAATGACTGCCATTGAAGAAATGGCTGGAATGGATGTGTTGTGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTACAGTGGACAAGAATATGATTGAGGTTTTTGCCAAAGGTGTTGATAGTAATATGGTTGTACTTATGGCTGCAAGAGCTTCAAGACTAGAGAACCAGGATGCCATTGATACTGCAATTGTATCAATGTTAGCAGACCCAAAAGAGGCAAGGGCTGGAATAAAGGAAGTTCATTTCCTTCCATTCAATCCAAGTGATAAAAGAACAGCAATTACATACATTGATAATGCTGGCAACATGCACAGGGTTAGCAAAGGTGCTCCAGAGCAGATTCTCAATCTTGCACATAACAAAACAGAAATTAGACAGAAAGTCCATGCAATTATTGACAAATTTGCAGAACGTGGACTTCGCTCTTTAGCTGTTGCTCGACAGGATGTACCGGACGGAAATAAAGAGAGTCCAGGAGGGCCGTGGGAATTCGTTGGCCTTCTTCCGCTTTTCGACCCTCCTCGCCATGATAGTGCCGAAACAATCACAAGAGCTCTTGATCTTGGTGTCAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGCTAAGGAAACAGGAAGGCGTCTTGGGATGGGAACTAACATGTATCCTTCTTCATCACTTCTTGGACAAAGTAAAGATGAACTTGCCGCTGTCTCCATCGACGAGCTCATCGAAAGCGCGGACGGTTTCGCCGGCGTCTTTCCCGAACACAAGTATGAGATAGTGAGGAGGTTACAAGCCAGAAAGCACATTTGTGGCATGACTGGTGATGGAGTGAACGATGCCCCTGCTCTCAAGAAAGCCGACATAGGTATCGCCGTCGCAGATTCCACCGACGCAGCCCGGAGCGCTTCCGATATAGTTCTAACTGAACCTGGTCTGAGTGTGATCATCAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACAATATATGCTGTTTCGATCACTATTCGTATTGTTCTTGGTTTCATGTTACTGACTTGCTTCTGGAAATTCGACTTCCCTCCCTTCATGGTTCTTGTCATCGCCATTCTCAACGATGGTACCATAATGACAATATCCAAAGACAGGGTTAAGCCTTCTCCAAACCCAGACAGTTGGAAGCTTAGCGAAATTTTCGCTACCGGAATTGTTCTTGGTAGCTACCAGGCTATAATGACAGTGGTCTTCTTCGTGTTGGTTTATGAAACAAACTTCTTCCCGAACTGTTTTGGAGTGAGACACTTCAGGAAGAGTCCAAAAGATCCTGTGACTGAAGAAATGAAGGAAATGGTTGGTTCAGCTGTGTATCTTCAAGTCAGTACAATTAGTCAAGCGTTAATCTTTGTCACACGCTCCAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTCTTGTTGCCTTCCTTATTGCTCAGCTGATTGCATCTATTATATCTGCCACCGTGACTTGGAAAACTGCTGGAATCAGAAGCATAGGTTGGGGATGGACTGGAGTAATATGGTTGTTTAATATTGTTACTTACATATTTCTTGATCCTTTGAAATTCGCCGTTCGTTATGCATTAAGCGGAAGAGCATGGAATCTGGTGGTTGACCAACGTATTGCGTTGACCAACAAAAATAAGTTCGGTAGAGAAGCTCGCGAGGCTGCGTGGGCCGCCGAGCAAAGAACCTTACACGGTCTCCGGCCGGCTGAACCGAAATCCTTTGCAGAAAAGCACACTTTTGGAGAATTGAATACATTGGCTGAAGAGACAAGAAGAAGAGCAGAGATAGCAAGGTTAAGAGAGCTTCACACTTTAAAAGGAAAGGTAGAATCATTTGCTAAGCTAAGAGGTTTTGACATTGATGCAATGAATGGACACTACACTCTCTAG 2970 0.4391 MLCSVWAFELDWELLLIIGLQKFIIILHCKASRVMELEAIIKEAVDLENIPLEEVFDNLKCTREGLKSKHVQERLDLFGYNKLEEKKESKILKFLSFMWNPLSWVMEAAAIMAIAMAHGGGKSGDYQDFAGIIILLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDAAVLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVESTTHVGHFQKVLTSIGNFCICSIAIGMLIEIIVIYGIQRREYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEVFAKGVDSNMVVLMAARASRLENQDAIDTAIVSMLADPKEARAGIKEVHFLPFNPSDKRTAITYIDNAGNMHRVSKGAPEQILNLAHNKTEIRQKVHAIIDKFAERGLRSLAVARQDVPDGNKESPGGPWEFVGLLPLFDPPRHDSAETITRALDLGVSVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDELAAVSIDELIESADGFAGVFPEHKYEIVRRLQARKHICGMTGDGVNDAPALKKADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTCFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPNPDSWKLSEIFATGIVLGSYQAIMTVVFFVLVYETNFFPNCFGVRHFRKSPKDPVTEEMKEMVGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLLVAFLIAQLIASIISATVTWKTAGIRSIGWGWTGVIWLFNIVTYIFLDPLKFAVRYALSGRAWNLVVDQRIALTNKNKFGREAREAAWAAEQRTLHGLRPAEPKSFAEKHTFGELNTLAEETRRRAEIARLRELHTLKGKVESFAKLRGFDIDAMNGHYTL 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00025 989 Gene3D - 357 655 IPR023214 -
Stsc30223g00025 989 Gene3D - 125 853 - -
Stsc30223g00025 989 SUPERFAMILY HAD-like 356 665 IPR036412 -
Stsc30223g00025 989 SFLD Haloacid Dehalogenase 342 669 - -
Stsc30223g00025 989 PRINTS P-type cation-transporting ATPase superfamily signature 210 224 - -
Stsc30223g00025 989 PRINTS P-type cation-transporting ATPase superfamily signature 618 637 - -
Stsc30223g00025 989 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Stsc30223g00025 989 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Stsc30223g00025 989 PRINTS P-type cation-transporting ATPase superfamily signature 514 525 - -
Stsc30223g00025 989 PRINTS P-type cation-transporting ATPase superfamily signature 641 653 - -
Stsc30223g00025 989 NCBIfam plasma-membrane proton-efflux P-type ATPase 65 844 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30223g00025 989 PRINTS H+-transporting ATPase (proton pump) signature 618 634 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 PRINTS H+-transporting ATPase (proton pump) signature 649 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 PRINTS H+-transporting ATPase (proton pump) signature 799 820 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 PRINTS H+-transporting ATPase (proton pump) signature 476 494 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 Pfam Cation transporter/ATPase, N-terminus 49 112 IPR004014 -
Stsc30223g00025 989 FunFam Plasma membrane ATPase 163 247 - -
Stsc30223g00025 989 SFLD p-type atpase 342 669 IPR044492 -
Stsc30223g00025 989 Gene3D - 372 519 IPR023299 GO:0000166
Stsc30223g00025 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 46 886 IPR023298 -
Stsc30223g00025 989 SUPERFAMILY Calcium ATPase, transduction domain A 163 260 IPR008250 -
Stsc30223g00025 989 Pfam E1-E2 ATPase 161 339 - -
Stsc30223g00025 989 Gene3D - 163 247 - -
Stsc30223g00025 989 PANTHER CALCIUM-TRANSPORTING ATPASE 48 922 - -
Stsc30223g00025 989 Pfam haloacid dehalogenase-like hydrolase 356 632 - -
Stsc30223g00025 989 SMART Cation_ATPase_N_a_2 46 118 IPR004014 -
Stsc30223g00025 989 FunFam Plasma membrane ATPase 512 666 - -
Stsc30223g00025 989 FunFam Plasma membrane ATPase 372 519 - -
Stsc30223g00025 989 NCBIfam HAD-IC family P-type ATPase 593 698 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 NCBIfam HAD-IC family P-type ATPase 132 379 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30223g00025 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 362 368 IPR018303 -
Stsc30223g00025 989 Gene3D - 938 989 - -
Stsc30223g00025 989 CDD P-type_ATPase_H 65 880 IPR006534 GO:0008553|GO:0016020|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00025 Stsc-Chr30223 184320 192525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00025 37 989 Primary Pumps ATPases AT3G60330 78.914 0.0 1536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00025 K01535 - gmx:100794938 1597.02