Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00024 ATGATGGATAATTCTCATGCTTATTTGGGGACCAGTGTGAATGTCCATGATCACGTTGATGCGGCTGCGGCCACATCATTCCCCCGGAATTCGAGCTTTAAAAACATATTTCTGGCGGAGAACTGGGCGGAGCTGCCGCTGAAGGAGGACGACGCGGATGACATGGTCATCTACGGCGCATTGCAGGAGGCTGCCACCACCGGATGGTGCCCTGCTAGAGACAATGGCAATGGTAGTAGTGCGGTGACGAAACAAGAAAATGAGGGAAAAAAGAATGGCATTGTGGAGGCGCGTGAGGTTCACGTGCAGGCAAAGGGCGGTAGAGGGTTTAGAGGGGTTCGTAGGCGGCCGTGGGGAAAATATGCGGCTGAGATAAGAGATCCCAAGAGGAACGGCGTGAGAGTGTGGCTTGGGACTTATGAGACGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCCGCGTTCAAGATGCGTGGCTCGAAAGCCAAGTTGAATTTTCCGCACTTGATTGGATCCGATGAAGTTGGTGAGCCGGTGAGGGTTACGCTGAAGCGGCGCTCACCAGAGACACCATTCTCTTGCCCTTCCTACTCTTTGGATTGTTGTAACAATGCGGAGAAGCGCAGCAAAAATGCAGTGGGGGCGGCTTTGGAGCCGGCTAACACAAGTACCTGGCAATTTTCCATCGGTGAATCTTGGTGGCAACAATAA 711 0.5316 MMDNSHAYLGTSVNVHDHVDAAAATSFPRNSSFKNIFLAENWAELPLKEDDADDMVIYGALQEAATTGWCPARDNGNGSSAVTKQENEGKKNGIVEAREVHVQAKGGRGFRGVRRRPWGKYAAEIRDPKRNGVRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDEVGEPVRVTLKRRSPETPFSCPSYSLDCCNNAEKRSKNAVGAALEPANTSTWQFSIGESWWQQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00024 236 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Stsc30223g00024 236 PRINTS Ethylene responsive element binding protein signature 149 169 IPR001471 GO:0003700|GO:0006355
Stsc30223g00024 236 PANTHER DNA-BINDING DOMAIN 81 189 IPR044808 GO:0003700|GO:0009873
Stsc30223g00024 236 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
Stsc30223g00024 236 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Stsc30223g00024 236 Pfam AP2 domain 109 159 IPR001471 GO:0003700|GO:0006355
Stsc30223g00024 236 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Stsc30223g00024 236 SUPERFAMILY DNA-binding domain 109 168 IPR016177 GO:0003677
Stsc30223g00024 236 FunFam Ethylene-responsive transcription factor 2 108 168 - -
Stsc30223g00024 236 CDD AP2 117 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00024 Stsc-Chr30223 181271 182190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00024 29 189 AP2-EREBP Transcription Factor Family AT2G44840 57.764 2.53e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc30223g00024 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00024 K09286 - gmx:100804762 222.631