Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00016 ATGTTCCGCCGAGCAACCACCCTCCTCCGCCGCCCACTCATGGGCGCCACATCCCGCCGATTCTCCACGGATCTGCCGGCGGCACCCGTAGAGGATTCGACCTTCGTGGAGGCATGGAAGAAAGTGAGCCCAAACGTGGACCCACCGAAGACTCCATTGGCGTACATGAAGCCTCGGCCAGCCACTCCTACTTCCCTTCCTTCGAAGCTGACTGTCAACTTCGTCCTCCCTTACGCTTCCGAACTCTCCGCTAAAGAGGTTGACATGGTAATAGTACCAGCAACAACTGGGCAAATGGGTGTTCTCCCTGGACATGTTGCAACCATTGCAGAGTTGAAACCTGGTGTCCTATCCGTTCATGAAGGCAATGATGTGACCAAGTACTTTATCAGCAGTGGCTTCGCCTTCATCCACGCGAATTCCGTTGCTGATATAATAGCTGTTGAAGCTGTACCAGTGGATCGAATTGATGCGAACTTAGTCCAGAAGGGGCTTCAAGAGTTCACTCAGAAGCTGAACTCGGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTCCATAGTGCTCTCAACTCAGCTCTTACAGGCTAA 603 0.524 MFRRATTLLRRPLMGATSRRFSTDLPAAPVEDSTFVEAWKKVSPNVDPPKTPLAYMKPRPATPTSLPSKLTVNFVLPYASELSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFISSGFAFIHANSVADIIAVEAVPVDRIDANLVQKGLQEFTQKLNSATTDLEKAEAQIGVDVHSALNSALTG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00016 200 Gene3D - 157 199 - -
Stsc30223g00016 200 Gene3D - 59 156 IPR036771 -
Stsc30223g00016 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 142 IPR020546 GO:0015986
Stsc30223g00016 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc30223g00016 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 28 200 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc30223g00016 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
Stsc30223g00016 200 Coils Coil 165 185 - -
Stsc30223g00016 200 NCBIfam ATP synthase F1 subunit epsilon 82 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc30223g00016 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc30223g00016 200 FunFam ATP synthase delta 59 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00016 Stsc-Chr30223 108159 125409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00016 1 200 Primary Pumps ATPases AT5G47030 73.171 1.48e-109 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00016 K02134 - gmx:100799603 345.895