Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00014 ATGGATGTATACTTTGAAAGGATGAAACTATTGTCAGATAACTTGAATTTATCTTCTAGAGTGAGGTTCATGTTGAAGGATGCCTTTGATCTGAGGAAAAATAAATGGCAACAGAGGAGAAAAGTTGAAGGTCCAAAGAAGATTGAGGAAGTGCATAGAGATGCTGTGCAAGAGAGGCAGGCCCAAGCCGGGAGGTTAGGCCGTGGTCCGAGTAACAATCAAACAGCAAGAAGGAACCCCGTGGACTTTGGCCCACGAGGATCTCAGGCTGGAGGACCACGTGGTCAAGCTCGCGGATTCGGCTCTCAGGATGGTTGTTCTGAAGAGAGACAACAAACTTTTGAGGCTAGGACCTTGTCTCAAAGAACCTTGGGGGATGATTCTATAACCTTAGGACCCCAGGGTGGTTTGGCTAGGGGAATGTCCATTAGAGGATCAAATGCAATTCATACCCCAATAGACTCTACTAATTCCAAAGCAACTGGTGGTCTTAATGGTTATGGGAATTCATCAGAGCATGCACCATGCAATGCCAATGCCAGGGAGGATAGGCTTTCAGGTTCAACTGCTTATGATCAATCAAGTGCTCTAGAGCGTAATACAGGCTTAGATAAAAAAGATTTGAGTGCTACATATCGAAGACCTGACAGGGTTGTTGCAACTTCACCTCCTGATCAATTGCAAGGGTCAATGGCTTCTCAAGTTACTTCTTCAGAAAAGGTTTGGCCAGAAGAACGACTGCGAGATATGTCCATGGCAGCAATCAAAGAATACTACAGTGCTAGAGATGAGAAGGAAGTTTCTTTATGTGTCAAAGAGTTGAACTCTCCAAGCTTCCATTCTTCCATGGTTTGTCTATGGATCACAGACTCATTTGAGAGAAAGGACACAGAACGAGACCTCTTGGCCAAATTGCTAGTTAACCTTGTCAAATCACAGGATGGCATCTTGACTCAAGCCCAGCTCATCCAAGGGTTCAAGTCGGTTCTGAATACATTGGAGGATGCAGTTAACGATGCTCCGAGAGCACCGGAGTTTCTCGGCCGAGTTTTCGCCAAAGTTATAATGGAGTGTGGTTTCCCTTTGAATGAGATCGGACGATTGTTACGCGATGGAGGAGAGGAACCAGGCAGCCTCTTAGAAACCGGACTGGCAGCTGATGTTCTTGGAAGTACCTTAGAAGCAATAAAATCTGAGAAGGGGGATGCAAATTTAAGAGATATGTGTGTTAGCTCTAAGTTGCAGTTGGAGAGTTTCCGTCCACCAAATCCTTTAACATCAATGAAGCTAGAGCGATTTATTTAG 1305 0.449 MDVYFERMKLLSDNLNLSSRVRFMLKDAFDLRKNKWQQRRKVEGPKKIEEVHRDAVQERQAQAGRLGRGPSNNQTARRNPVDFGPRGSQAGGPRGQARGFGSQDGCSEERQQTFEARTLSQRTLGDDSITLGPQGGLARGMSIRGSNAIHTPIDSTNSKATGGLNGYGNSSEHAPCNANAREDRLSGSTAYDQSSALERNTGLDKKDLSATYRRPDRVVATSPPDQLQGSMASQVTSSEKVWPEERLRDMSMAAIKEYYSARDEKEVSLCVKELNSPSFHSSMVCLWITDSFERKDTERDLLAKLLVNLVKSQDGILTQAQLIQGFKSVLNTLEDAVNDAPRAPEFLGRVFAKVIMECGFPLNEIGRLLRDGGEEPGSLLETGLAADVLGSTLEAIKSEKGDANLRDMCVSSKLQLESFRPPNPLTSMKLERFI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00014 434 FunFam Eukaryotic translation initiation factor 4G 240 433 - -
Stsc30223g00014 434 MobiDBLite consensus disorder prediction 223 240 - -
Stsc30223g00014 434 SMART ma3_7 247 361 IPR003891 -
Stsc30223g00014 434 SUPERFAMILY ARM repeat 242 432 IPR016024 -
Stsc30223g00014 434 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 434 IPR045208 GO:0003743
Stsc30223g00014 434 MobiDBLite consensus disorder prediction 105 128 - -
Stsc30223g00014 434 MobiDBLite consensus disorder prediction 35 59 - -
Stsc30223g00014 434 MobiDBLite consensus disorder prediction 148 198 - -
Stsc30223g00014 434 ProSiteProfiles MI domain profile. 246 370 IPR003891 -
Stsc30223g00014 434 Gene3D - 1 48 - -
Stsc30223g00014 434 Gene3D - 240 434 - -
Stsc30223g00014 434 Pfam MA3 domain 251 359 IPR003891 -
Stsc30223g00014 434 SUPERFAMILY ARM repeat 2 60 IPR016024 -
Stsc30223g00014 434 MobiDBLite consensus disorder prediction 35 240 - -
Stsc30223g00014 434 MobiDBLite consensus disorder prediction 199 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00014 Stsc-Chr30223 98124 99971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00014 1 433 Eukaryotic Initiation Factors Gene Family AT3G60240 50.655 2.90e-123 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00014 K03260 - gmx:100819084 549.28