Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00013 ATGGGAACTAGTTACCCATCTGAAGTCTTTCATGGTGTTCACTTTGTTCTCTTTGGTTTCAGTCCCAACGATGAAACTCAGGTCCGTTTCAAGCTTGTGAACGGTGGTGCAGTGGATGAAGGCAAGTACAGTGGAAGTTGCACGCACGTCATTGTCGATAAGATCCCATATGACGATCCTGTGTGTATTGCTGCAAGAAACGACGGGAAGACCGTGGTAACTAAATTGTGGGTTGAACACAGCTCTGATATTGCAATGCCTGTCGATACTGCCTCGGTTATGTACAGACCTCTTAAGGATTTAAATGGAATACCTGGTGCCAAGAATTTGGTTGTGTGCTTAACTGGTTATCTACGACAGGATCGTGATGATATTATGACAATGGTTGACCTCATTGGTGCAACATTTCTTAAGCCCTTGGTGGCAAACAAGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGAATGGGAACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAATGCTGGGAGCTTCTTCCAGAAGAAAATTACAACAAGAGGTGA 582 0.4313 MGTSYPSEVFHGVHFVLFGFSPNDETQVRFKLVNGGAVDEGKYSGSCTHVIVDKIPYDDPVCIAARNDGKTVVTKLWVEHSSDIAMPVDTASVMYRPLKDLNGIPGAKNLVVCLTGYLRQDRDDIMTMVDLIGATFLKPLVANKVTHLVCYKFEGEKYELAKRMGTIKLVNHRWLEDCLKCWELLPEENYNKR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00013 193 SUPERFAMILY BRCT domain 6 89 IPR036420 -
Stsc30223g00013 193 Gene3D BRCT domain 2 92 IPR036420 -
Stsc30223g00013 193 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 7 192 IPR044254 -
Stsc30223g00013 193 Pfam twin BRCT domain 110 174 IPR001357 -
Stsc30223g00013 193 SUPERFAMILY BRCT domain 108 190 IPR036420 -
Stsc30223g00013 193 Gene3D BRCT domain 98 193 IPR036420 -
Stsc30223g00013 193 ProSiteProfiles BRCT domain profile. 108 192 IPR001357 -
Stsc30223g00013 193 SMART BRCT_7 105 182 IPR001357 -
Stsc30223g00013 193 SMART BRCT_7 7 85 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00013 Stsc-Chr30223 82649 84296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00013 128 190 Core DNA Replication Machinery Family AT4G02110 77.778 5.54e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00013 K10728 - gmx:100783461 314.694