Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00012 ATGGATGATGAAACAGAGGCTCCTGATGATAAATGTGAACTTGAGTTGGGAATGGAACTAGATGAAAATAAAAGCAAAGCGGACAAGACAGCAGAGAAGTCAGAAGAAATGCACCATGTAACAGAATGTGAAGCAGCAGTGCCTCAGAAGGAAACATCAGATTTAACTGAAAAAGAGAAGGCACCTTTAGAAGATGATTCAACCACAAAACACAAAGTAAAACATCAAGTGAAAAAGCGTCCTTCAGGTAGACCCAAGAAAGCCACTGTTGCCAAGGGATTACAGAAATCTGAAGTGGCACTGTCTGAGAATAAGATTCACGAAAATGTGGCTCGAATGGAATCCCCAAAAGAAGTATCTCATGTTACAGACGTGAGTGGCAACTCCACTGCATCAAGAAAGGAAATTAAAGATTCAACAGAGGAGAAGGAAAATAAACCAATTGATGATGGAGAGCAGGATGTGCTTGAGGCCAAAAATGTTGCCAATCGAACTAATAAATTGAGTTCAAAGTCAGCAAAAACAAACTCCAAGAGAACAGGTTGTAATCCACCTATATCAGAAGCTAACAAAAGACTGAAAACTGAAGCATCATGTTTCATATTAACTGGGCATAAACTTTTGAGAAAGGATTTCCAACAAGTGATCAAGAAGTTAAAGGGAAAGGTTTGCCGGGATTCTCATCAGTGGTCATATCAAGCAACACACTTCATAGCACCAGAGCCTCTACGGAGGATAGAGAAATTTTTCGCTGCTGCTGCATCAGGAAGGTGGATTCTGAAAACTGATTTCTTAACTGCTAGCAATCAGGCTGGGAAATTTGTGGCAGAGGAACCTTATGAGTGGCATGATATTGGTCTCAACGAGGATAGCACAATCGATATGGAGGCTCCTAGAAAGTGGCGGCTGCTGAAAGAGCGAACTGGTCATGGTGCTTTCTATGGAATGCGCATTATTGTGTATGGTGACTGCATAACTCCACCTTTGGATACTCTGAAGCGAGTTGTCAAAGCTGGAGATGGAACAATACTAGCTACCTCTCCTCCTTACACACGCTTCCTTGGTACCGAAATTGATTATGCCATAGTTTCTCCTGGTATGCCACGTGTTGACCTGTGGGTACAAGAATTCTTAAAACATGAGATACCTTGTGTTTCTGCTGACTACTTAGTCGAGTATGTATGCAAACCATGTTCTACACTTGAGAAACACGTATTATATGACACTCATGCTTGGGCAGAAAGGTCATTTTCCAAACTCAAGAATAGAGAAGAAGAGACCATTGGTACTGAAGAGGAATCAGTTAGAACTCCTGAAAGCAATGATATAGCTTGTGAAGTTTGTGGATCCAGGGATAGAGGGGAAGAGATGCTGATTTGTGGTGATGAGAGTGGTTCTGTTGGTTGTGGAGTTGGTACTCATATTGATTGTTGTGACCCTCCACTTATGGATGTTCCTGAGGAGGATTGGTTTTGCCCCAAATGCACTGATAAACAAAACTGCTCAAACTCTCCCAAGAAAAGGAAAAAGGGTGGTTTCTCCAAGACTAAAAAGTAA 1557 0.4162 MDDETEAPDDKCELELGMELDENKSKADKTAEKSEEMHHVTECEAAVPQKETSDLTEKEKAPLEDDSTTKHKVKHQVKKRPSGRPKKATVAKGLQKSEVALSENKIHENVARMESPKEVSHVTDVSGNSTASRKEIKDSTEEKENKPIDDGEQDVLEAKNVANRTNKLSSKSAKTNSKRTGCNPPISEANKRLKTEASCFILTGHKLLRKDFQQVIKKLKGKVCRDSHQWSYQATHFIAPEPLRRIEKFFAAAASGRWILKTDFLTASNQAGKFVAEEPYEWHDIGLNEDSTIDMEAPRKWRLLKERTGHGAFYGMRIIVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTEIDYAIVSPGMPRVDLWVQEFLKHEIPCVSADYLVEYVCKPCSTLEKHVLYDTHAWAERSFSKLKNREEETIGTEEESVRTPESNDIACEVCGSRDRGEEMLICGDESGSVGCGVGTHIDCCDPPLMDVPEEDWFCPKCTDKQNCSNSPKKRKKGGFSKTKK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00012 518 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 21 511 IPR044254 -
Stsc30223g00012 518 SMART PHD_3 444 496 IPR001965 -
Stsc30223g00012 518 MobiDBLite consensus disorder prediction 159 184 - -
Stsc30223g00012 518 SUPERFAMILY BRCT domain 205 286 IPR036420 -
Stsc30223g00012 518 Gene3D BRCT domain 309 412 IPR036420 -
Stsc30223g00012 518 MobiDBLite consensus disorder prediction 496 518 - -
Stsc30223g00012 518 MobiDBLite consensus disorder prediction 101 119 - -
Stsc30223g00012 518 MobiDBLite consensus disorder prediction 11 72 - -
Stsc30223g00012 518 ProSiteProfiles Zinc finger PHD-type profile. 442 498 IPR019787 -
Stsc30223g00012 518 SMART BRCT_7 310 397 IPR001357 -
Stsc30223g00012 518 SMART BRCT_7 190 272 IPR001357 -
Stsc30223g00012 518 Pfam PHD-finger 445 497 IPR019787 -
Stsc30223g00012 518 Pfam BRCA1 C Terminus (BRCT) domain 208 268 IPR001357 -
Stsc30223g00012 518 ProSiteProfiles BRCT domain profile. 197 282 IPR001357 -
Stsc30223g00012 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 517 IPR013083 -
Stsc30223g00012 518 MobiDBLite consensus disorder prediction 1 188 - -
Stsc30223g00012 518 SUPERFAMILY FYVE/PHD zinc finger 433 502 IPR011011 -
Stsc30223g00012 518 MobiDBLite consensus disorder prediction 134 157 - -
Stsc30223g00012 518 Gene3D BRCT domain 193 308 IPR036420 -
Stsc30223g00012 518 CDD BRCT_TopBP1_rpt7 199 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00012 Stsc-Chr30223 77720 80118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00012 138 423 Core DNA Replication Machinery Family AT4G02110 58.020 4.42e-117 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc30223g00012 BRCT 8.9e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00012 K10728 - gmx:100799144 660.218