LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30223g00002	ATGGAAGGTCTCTCCTTTTCATATTATAGAGATCATCTTGAAACTTTTTCAATCTTCTCCAACTCATCATCTTCTTCATCATCTAATAATATTACATATTATATCCAACTCATAGATCAAGACACTGGAGAGGCCTATGGTGAACCTACAAAATACAATAATTATTCTTCTATTAACCAAAATTTGATTTTAGAAGCTCTTGAATTTTCTTATTCATATGCATTCAACACTACCTCATTGGGCACCAATTGGACCATTATTATTGATGATAATGGCCATAACCCTTTGTTTCTCAACTCAGAAAGAGTCACAAGAACAAGTGTGCTCTCTCTAGGGTTTTCGGTAACAACAATAACTGATTTTGTCTTGGCTCATGAAAACAATGGTGATAATCGAAGTTTAATAAGCATGGCTTGGGGTACAAAAGATGGAGGGGCTATTGTACAAGGGATCCCTAATACTCATTTGGTGATTTCTAATGATACGGTTTCCCTTCAAGCATTGGACCAAAATGGAAACCCTAATAATGGTGTTGGAGGCACTACTATACCATGTAACAATGAAAGATTTGGATCTGGTTTGAATATTCAGAATACTGAATATTTAATTCACTGCAGCACAATTGATATAATGGGAACAGAATCGGTATATGTTGTGGCTATCCCAAAGAATGAATTACTGAGCTTCGATCATCATCAGCAGCAGCTTTACAAGAAAAAGGGGTTGGCACTCTTGATTGTAATGATATTCATGATATTAATTGCTCTCTTAAGCTTTCTAAGCATGAATGCAAGAAATGCAAAACGAGAAATGCGTTTGCGTGCATCACTGTTGAAGCAAATGGAAGCAACCCAGCAAGCTGAGAGAAAGAACATGAACAAGACCCATGCTTTTGCTGCTGCCAATCATGATGTTAGGGCTTCTCTTGCTGGCCTTACTGCTTTGATAGACATGTCTTTTGACCTTGTTGATAATGGCTCTGAATTGGAGACCAATTTGAAACAAATGAAGGGTTGCACCCAAGACTTACTAGGACTTGTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATGCAGCTTGAGGAAGAGGAATTTGATTTATCAATTCTCTTAGAAGACGTAGTTGACTTATACTACCCTATGGCTTCAAACAAAGGTGTGGATCTAATCTTGGACCCTTGTGATGGTTCTATTATTAGATATTCACGTGTGAAAGGAGACAGAGGAAGACTCAAACAAGTTCTGTGCAATCTCTTGAGCAATGCTGTTAAATTCACTAATGAAGGCCACATAGCGGTTAGAGCAAGAGCTCAAAAGCCAACAAGCTTGCATAATTCATTAATGGGTAGTAGTAGTAGTGGTGAAAAACATGGTGGATTCATGGAACGTTTATCATCATGGTTATTTTGGAAGAAAAGTAGTGAAGAAGCAGGAGGTGATCATCATGAAGGTGAATCCATGAGTGATTCAACACAGCAAACAGAAGCATGTTGTGTTATGGATTTTATATTTGAAGTGGATGACACAGGGAAAGGAATCCCCAAAGAGAATTACAAGTCAGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCACTTGGACTTGGAGGAACTGGCTTGGGTCTTGGGATTGTGCAATCATTGGTGCGTTTGATGCATGGGGACATTGAAATCTCAGAGAAGGACTTGGGAGAAAAGGGAACATGCTTCACCTTCAATGTGCTCCTTAATGCATACAACACAATCACAAATCCTACTCCAAAAGAAGAAGAAGAACAACAACAAGGTTCTAATGAAAAGGGGCCATTACCAACCCTTCAAACTTGTAGCTCAGGTTCAAGCATTTGTTCCATTAGCCCAAGATTTCGCATTCGCGGCTCCAGTCCCAAGCCAGAGCCTTCTCGAGTCGTCATGCTAATCGCCGACGAGTATCGCCGCAAGGCCACTCAGAGGTTCATGGAGAGCTTAGGGATCAAAGTTATGGCCGCGAAACGATGGCAGGATCTGTTTCATGTCCTTAAGAAGATCAAACAGAGGTGTCTTAATTCAAGCAGCCAGAGTAGCAGTTCCCATGGATCTGAGTATTTGAGTGTGAGCTCTACTCTTTCCCGTAGTAGAGGACTTCCATTGAGTTCTATGGATGGAAATTTCGATGAACTGAATCTTTCTGATGGCCTTGTCCTTGTTGTGGTGGACACAAATGCCGGACCGGTTTTCGAACTCTGGAAGATGGTTTCTAACTTCAAAAGAGGTCTTTGTAACCCTTGTCAAATTGTTTGGTTAGATAAGAAGAAGATGCTCTTGAAGGATCTTGATAGGAACATGCTTGATCAGAAAGATATTGTTCTGATGAAACCGTTTCATGGTAGCAGATTGTTTCAGGTTATGAGGCTTCTTCCGGAGTTCGGCGGAGGAAGTAGTAGGTCTCATAACAGTAGAAGTGGGAAAAGTTTAAGGGATTGGAACTCATCATCAAGATGTCATTCCTATCATGAAGGAGAAAGAAAAGGTGAAAATGATGGAGGAGAAATAATACAAGAAGGTGAGGATGCAAAGCCTTTAAGTGAGAAGAAGATATTGGTTGTTGATGATAATCCATTGATGAGGATGATTGCTTTGCGTACTTTGATCCAGCTGGGTGCTGTTATAGAACAGTGTGAGAATGGAGAAGCAGCTGTGAAGCTAGTTGGTGATGGTTTAATCAAGGATTTTCCTAATCTCCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGAAATGGATGGGTTCGAGGCAACAAGGGAAATAAGAAAGATAGAGAAGAGGTATGAAAATGTTCGGATTCCTATAATTGCATTAACGGCTGAGACAGACAAGATGAGTATAGATGCTGGAATGGACTTTCATTTGGAAAAGCCCATCAAGAGACAGAATTTTCTTGCAGCCATTCGATACATAAATGCTAAACACAGTTAG	2967	0.3984	MEGLSFSYYRDHLETFSIFSNSSSSSSSNNITYYIQLIDQDTGEAYGEPTKYNNYSSINQNLILEALEFSYSYAFNTTSLGTNWTIIIDDNGHNPLFLNSERVTRTSVLSLGFSVTTITDFVLAHENNGDNRSLISMAWGTKDGGAIVQGIPNTHLVISNDTVSLQALDQNGNPNNGVGGTTIPCNNERFGSGLNIQNTEYLIHCSTIDIMGTESVYVVAIPKNELLSFDHHQQQLYKKKGLALLIVMIFMILIALLSFLSMNARNAKREMRLRASLLKQMEATQQAERKNMNKTHAFAAANHDVRASLAGLTALIDMSFDLVDNGSELETNLKQMKGCTQDLLGLVNSILDTSKIEAGKMQLEEEEFDLSILLEDVVDLYYPMASNKGVDLILDPCDGSIIRYSRVKGDRGRLKQVLCNLLSNAVKFTNEGHIAVRARAQKPTSLHNSLMGSSSSGEKHGGFMERLSSWLFWKKSSEEAGGDHHEGESMSDSTQQTEACCVMDFIFEVDDTGKGIPKENYKSVFENYVQVKETALGLGGTGLGLGIVQSLVRLMHGDIEISEKDLGEKGTCFTFNVLLNAYNTITNPTPKEEEEQQQGSNEKGPLPTLQTCSSGSSICSISPRFRIRGSSPKPEPSRVVMLIADEYRRKATQRFMESLGIKVMAAKRWQDLFHVLKKIKQRCLNSSSQSSSSHGSEYLSVSSTLSRSRGLPLSSMDGNFDELNLSDGLVLVVVDTNAGPVFELWKMVSNFKRGLCNPCQIVWLDKKKMLLKDLDRNMLDQKDIVLMKPFHGSRLFQVMRLLPEFGGGSSRSHNSRSGKSLRDWNSSSRCHSYHEGERKGENDGGEIIQEGEDAKPLSEKKILVVDDNPLMRMIALRTLIQLGAVIEQCENGEAAVKLVGDGLIKDFPNLPYDYILMDCQMPEMDGFEATREIRKIEKRYENVRIPIIALTAETDKMSIDAGMDFHLEKPIKRQNFLAAIRYINAKHS	988

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30223g00002	988	SMART	HKATPase_4	409	581	IPR003594	-
	Stsc30223g00002	988	SUPERFAMILY	CheY-like	857	982	IPR011006	-
	Stsc30223g00002	988	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	281	361	IPR036097	GO:0000155\|GO:0007165
	Stsc30223g00002	988	PANTHER	TWO-COMPONENT HISTIDINE KINASE	6	981	-	-
	Stsc30223g00002	988	MobiDBLite	consensus disorder prediction	587	615	-	-
	Stsc30223g00002	988	Gene3D	-	842	987	-	-
	Stsc30223g00002	988	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	409	579	IPR003594	-
	Stsc30223g00002	988	ProSiteProfiles	Response regulatory domain profile.	861	984	IPR001789	GO:0000160
	Stsc30223g00002	988	MobiDBLite	consensus disorder prediction	828	848	-	-
	Stsc30223g00002	988	ProSiteProfiles	Histidine kinase domain profile.	300	581	IPR005467	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30223g00002	Stsc-Chr30223	14337	20034	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30223g00002	2	987	Histidine Kinase Gene Family	AT2G47430	39.924	0.0	644

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Stsc30223g00002		HATPase_c	4.3e-25	CL0025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30223g00002	-		-	ahf:112708949	1301.96

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