Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30223g00002 ATGGAAGGTCTCTCCTTTTCATATTATAGAGATCATCTTGAAACTTTTTCAATCTTCTCCAACTCATCATCTTCTTCATCATCTAATAATATTACATATTATATCCAACTCATAGATCAAGACACTGGAGAGGCCTATGGTGAACCTACAAAATACAATAATTATTCTTCTATTAACCAAAATTTGATTTTAGAAGCTCTTGAATTTTCTTATTCATATGCATTCAACACTACCTCATTGGGCACCAATTGGACCATTATTATTGATGATAATGGCCATAACCCTTTGTTTCTCAACTCAGAAAGAGTCACAAGAACAAGTGTGCTCTCTCTAGGGTTTTCGGTAACAACAATAACTGATTTTGTCTTGGCTCATGAAAACAATGGTGATAATCGAAGTTTAATAAGCATGGCTTGGGGTACAAAAGATGGAGGGGCTATTGTACAAGGGATCCCTAATACTCATTTGGTGATTTCTAATGATACGGTTTCCCTTCAAGCATTGGACCAAAATGGAAACCCTAATAATGGTGTTGGAGGCACTACTATACCATGTAACAATGAAAGATTTGGATCTGGTTTGAATATTCAGAATACTGAATATTTAATTCACTGCAGCACAATTGATATAATGGGAACAGAATCGGTATATGTTGTGGCTATCCCAAAGAATGAATTACTGAGCTTCGATCATCATCAGCAGCAGCTTTACAAGAAAAAGGGGTTGGCACTCTTGATTGTAATGATATTCATGATATTAATTGCTCTCTTAAGCTTTCTAAGCATGAATGCAAGAAATGCAAAACGAGAAATGCGTTTGCGTGCATCACTGTTGAAGCAAATGGAAGCAACCCAGCAAGCTGAGAGAAAGAACATGAACAAGACCCATGCTTTTGCTGCTGCCAATCATGATGTTAGGGCTTCTCTTGCTGGCCTTACTGCTTTGATAGACATGTCTTTTGACCTTGTTGATAATGGCTCTGAATTGGAGACCAATTTGAAACAAATGAAGGGTTGCACCCAAGACTTACTAGGACTTGTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATGCAGCTTGAGGAAGAGGAATTTGATTTATCAATTCTCTTAGAAGACGTAGTTGACTTATACTACCCTATGGCTTCAAACAAAGGTGTGGATCTAATCTTGGACCCTTGTGATGGTTCTATTATTAGATATTCACGTGTGAAAGGAGACAGAGGAAGACTCAAACAAGTTCTGTGCAATCTCTTGAGCAATGCTGTTAAATTCACTAATGAAGGCCACATAGCGGTTAGAGCAAGAGCTCAAAAGCCAACAAGCTTGCATAATTCATTAATGGGTAGTAGTAGTAGTGGTGAAAAACATGGTGGATTCATGGAACGTTTATCATCATGGTTATTTTGGAAGAAAAGTAGTGAAGAAGCAGGAGGTGATCATCATGAAGGTGAATCCATGAGTGATTCAACACAGCAAACAGAAGCATGTTGTGTTATGGATTTTATATTTGAAGTGGATGACACAGGGAAAGGAATCCCCAAAGAGAATTACAAGTCAGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCACTTGGACTTGGAGGAACTGGCTTGGGTCTTGGGATTGTGCAATCATTGGTGCGTTTGATGCATGGGGACATTGAAATCTCAGAGAAGGACTTGGGAGAAAAGGGAACATGCTTCACCTTCAATGTGCTCCTTAATGCATACAACACAATCACAAATCCTACTCCAAAAGAAGAAGAAGAACAACAACAAGGTTCTAATGAAAAGGGGCCATTACCAACCCTTCAAACTTGTAGCTCAGGTTCAAGCATTTGTTCCATTAGCCCAAGATTTCGCATTCGCGGCTCCAGTCCCAAGCCAGAGCCTTCTCGAGTCGTCATGCTAATCGCCGACGAGTATCGCCGCAAGGCCACTCAGAGGTTCATGGAGAGCTTAGGGATCAAAGTTATGGCCGCGAAACGATGGCAGGATCTGTTTCATGTCCTTAAGAAGATCAAACAGAGGTGTCTTAATTCAAGCAGCCAGAGTAGCAGTTCCCATGGATCTGAGTATTTGAGTGTGAGCTCTACTCTTTCCCGTAGTAGAGGACTTCCATTGAGTTCTATGGATGGAAATTTCGATGAACTGAATCTTTCTGATGGCCTTGTCCTTGTTGTGGTGGACACAAATGCCGGACCGGTTTTCGAACTCTGGAAGATGGTTTCTAACTTCAAAAGAGGTCTTTGTAACCCTTGTCAAATTGTTTGGTTAGATAAGAAGAAGATGCTCTTGAAGGATCTTGATAGGAACATGCTTGATCAGAAAGATATTGTTCTGATGAAACCGTTTCATGGTAGCAGATTGTTTCAGGTTATGAGGCTTCTTCCGGAGTTCGGCGGAGGAAGTAGTAGGTCTCATAACAGTAGAAGTGGGAAAAGTTTAAGGGATTGGAACTCATCATCAAGATGTCATTCCTATCATGAAGGAGAAAGAAAAGGTGAAAATGATGGAGGAGAAATAATACAAGAAGGTGAGGATGCAAAGCCTTTAAGTGAGAAGAAGATATTGGTTGTTGATGATAATCCATTGATGAGGATGATTGCTTTGCGTACTTTGATCCAGCTGGGTGCTGTTATAGAACAGTGTGAGAATGGAGAAGCAGCTGTGAAGCTAGTTGGTGATGGTTTAATCAAGGATTTTCCTAATCTCCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGAAATGGATGGGTTCGAGGCAACAAGGGAAATAAGAAAGATAGAGAAGAGGTATGAAAATGTTCGGATTCCTATAATTGCATTAACGGCTGAGACAGACAAGATGAGTATAGATGCTGGAATGGACTTTCATTTGGAAAAGCCCATCAAGAGACAGAATTTTCTTGCAGCCATTCGATACATAAATGCTAAACACAGTTAG 2967 0.3984 MEGLSFSYYRDHLETFSIFSNSSSSSSSNNITYYIQLIDQDTGEAYGEPTKYNNYSSINQNLILEALEFSYSYAFNTTSLGTNWTIIIDDNGHNPLFLNSERVTRTSVLSLGFSVTTITDFVLAHENNGDNRSLISMAWGTKDGGAIVQGIPNTHLVISNDTVSLQALDQNGNPNNGVGGTTIPCNNERFGSGLNIQNTEYLIHCSTIDIMGTESVYVVAIPKNELLSFDHHQQQLYKKKGLALLIVMIFMILIALLSFLSMNARNAKREMRLRASLLKQMEATQQAERKNMNKTHAFAAANHDVRASLAGLTALIDMSFDLVDNGSELETNLKQMKGCTQDLLGLVNSILDTSKIEAGKMQLEEEEFDLSILLEDVVDLYYPMASNKGVDLILDPCDGSIIRYSRVKGDRGRLKQVLCNLLSNAVKFTNEGHIAVRARAQKPTSLHNSLMGSSSSGEKHGGFMERLSSWLFWKKSSEEAGGDHHEGESMSDSTQQTEACCVMDFIFEVDDTGKGIPKENYKSVFENYVQVKETALGLGGTGLGLGIVQSLVRLMHGDIEISEKDLGEKGTCFTFNVLLNAYNTITNPTPKEEEEQQQGSNEKGPLPTLQTCSSGSSICSISPRFRIRGSSPKPEPSRVVMLIADEYRRKATQRFMESLGIKVMAAKRWQDLFHVLKKIKQRCLNSSSQSSSSHGSEYLSVSSTLSRSRGLPLSSMDGNFDELNLSDGLVLVVVDTNAGPVFELWKMVSNFKRGLCNPCQIVWLDKKKMLLKDLDRNMLDQKDIVLMKPFHGSRLFQVMRLLPEFGGGSSRSHNSRSGKSLRDWNSSSRCHSYHEGERKGENDGGEIIQEGEDAKPLSEKKILVVDDNPLMRMIALRTLIQLGAVIEQCENGEAAVKLVGDGLIKDFPNLPYDYILMDCQMPEMDGFEATREIRKIEKRYENVRIPIIALTAETDKMSIDAGMDFHLEKPIKRQNFLAAIRYINAKHS 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30223g00002 988 SMART HKATPase_4 409 581 IPR003594 -
Stsc30223g00002 988 SUPERFAMILY CheY-like 857 982 IPR011006 -
Stsc30223g00002 988 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 281 361 IPR036097 GO:0000155|GO:0007165
Stsc30223g00002 988 PANTHER TWO-COMPONENT HISTIDINE KINASE 6 981 - -
Stsc30223g00002 988 MobiDBLite consensus disorder prediction 587 615 - -
Stsc30223g00002 988 Gene3D - 842 987 - -
Stsc30223g00002 988 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 409 579 IPR003594 -
Stsc30223g00002 988 ProSiteProfiles Response regulatory domain profile. 861 984 IPR001789 GO:0000160
Stsc30223g00002 988 MobiDBLite consensus disorder prediction 828 848 - -
Stsc30223g00002 988 ProSiteProfiles Histidine kinase domain profile. 300 581 IPR005467 -
Stsc30223g00002 988 SMART REC_2 860 980 IPR001789 GO:0000160
Stsc30223g00002 988 CDD REC_hyHK_CKI1_RcsC-like 862 980 - -
Stsc30223g00002 988 Pfam Response regulator receiver domain 862 980 IPR001789 GO:0000160
Stsc30223g00002 988 Gene3D - 361 583 IPR036890 -
Stsc30223g00002 988 MobiDBLite consensus disorder prediction 807 848 - -
Stsc30223g00002 988 Gene3D - 280 360 - -
Stsc30223g00002 988 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 348 577 IPR036890 -
Stsc30223g00002 988 PRINTS Bacterial sensor protein C-terminal signature 505 519 IPR004358 GO:0016310|GO:0016772
Stsc30223g00002 988 PRINTS Bacterial sensor protein C-terminal signature 539 557 IPR004358 GO:0016310|GO:0016772
Stsc30223g00002 988 PRINTS Bacterial sensor protein C-terminal signature 523 533 IPR004358 GO:0016310|GO:0016772
Stsc30223g00002 988 SMART HisKA_10 293 359 IPR003661 GO:0000155|GO:0007165
Stsc30223g00002 988 CDD HisKA 291 355 IPR003661 GO:0000155|GO:0007165
Stsc30223g00002 988 MobiDBLite consensus disorder prediction 808 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30223g00002 Stsc-Chr30223 14337 20034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30223g00002 2 987 Histidine Kinase Gene Family AT2G47430 39.924 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc30223g00002 HATPase_c 4.3e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30223g00002 - - ahf:112708949 1301.96