Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30222g00034 ATGCCTGTGCTGCGTAGCGGAGCGCGCAGGGGCCGGGCAGCAGCGAAGAAGAAGCAGCAACAACAACAGGAGGAGCCACAGCCACAGCAGTTACAACCGCAGAATCCGGTGGTGGAAGGGGAAGCGATTGCTACGAGAACAAGGAGGCGTCGTGCGGCGGCGGCGGCAGGAGNNNNNNNNNNAAAGAAGAAGGAGGAGGAGGAGGAGCAGGCGAAGGTCAATGAGAAGGTAGTTGTTGAGAAGGAGGAAGAGAAGAAGGGAGTTGAGGTTGGTGAAGGAGCAGAGAAAGAAGAGGTAGGAGAGAAACAGATGGATGATTTAGACAGCGGTGGCCGCAGCAATAAGGCCAATGCTGGTGAAGATGAGGGCACCACTGCTCCACTTCCAGAGAAGGTTCAAGTAGGTGGTTCTCCTTTGTATAAATTAGAAAGAAAACTTGGAAAGGGTGGATTTGGTCAAGTATATGTTGGTCGGCGGATTACCGGTGGGAATTTGAATGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCGTTAAAATTTGAGCATAGAAGTAGTAAAGGATGTAATTATGGACCACCATACGAGTGGCAAGTGTACAACACTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGAAGGCAAGGTGACTATTATGTTATGGTTATGGATATGCTGGGTCCAAGCTTGTGGGATGTTTGGAATAACAACTCTCACAGCATGTCCACAGAAATGGTTGCATGTATTGCCATTGAGGCAATATCCATCTTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACACCTAATGAGAAGAAATTGTTTCTTGTGGATCTTGGATTGGCTACTAAATGGCGAGATAGTACAACGGGTTTGCATGTAGAATATGACCAAAGGCCGGATGTTTTCAGGGGCACCGTCCGATATGCTAGTGCAAATGCACATTTAGGGAGAACCGGAAGCAGGAGGGATGATTTGGAATCTCTAGCTTATACACTGATTTTTCTTCTTCGAGGTCGTCTTCCTTGGCAGGGTTTCCAGGGAGAAAACAAAGGATTTCTTGTCTGCAAGAAGAAGATGGGGACGCCTCCAGAAAGCTTATGTTGCTTTTGTCCCCATCCTTTTAAACTATTTGTTGAACATGTTGTGAACTTAAAGTTCGATGAAGAACCTAACTATGCAAAATACATTTCTTTCTTCGATGGAATTGTTGGTCCAAATCCAGATATCAGGCCGATTAATACAGAAGGCGCACAAAAGCTCATTGGTCACAAGAGAGCCCGGCAGGCAATGGAAGATGACGACGATGAACAACCCAAAAAGAAGTACCGTATGGGTTTGCCAGCAACTCAGTGGATAAGTGTTTACAATGCTCGTAGACCTATGAAACAAAGATATCACTACAATGTGTCTGATCAAAGGCTTTCTCAGCATATTGAGAAAGGGAATGAGGATGGTTTATATATTAGCAGTGTTGCTTCATGTCAGAACCTGTGGGCCTTAATAATGGATGCAGGAACTGGTTTCACTTCCCAAGTGTATGAACTTTCCTATTACTTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAGAATTATTATATCAGCGCAATTGCTGGAGCTGCAAATGGAAGCTCTCTAGTAGTGATGTCTAAGGGCACACAGTATCTGCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTCAAGTGGATCAACAAAAAATGGAGAGAGGGATTTTATGTAACTTCAATGGCTACCTCATTGAACAGATGGGGAGTAGTTATGTCTCGTGGTGCAGGATTTTCTGACCAGGTGGTTGAGCTAGATTTCCTGTACCCTAGTGAAGGGATTCACAAGCGGTGGGATTGTGGATACCGAATCACCTCAACTGCCGCAACATGGGATCAAGCGGCTTTTGTCCTGAGTGTACCCAGGAAGAAGCCGGCGGATGAAACTCAGGAAACACTTAGGACTTCTGCCTTTCCTAGTACACATGTCAAGGAGAAGTGGGGGAAGAACCTCTACATTGCTTCAATATGCTATGGACGTACAGTTTCTTGA 2115 0.4563 MPVLRSGARRGRAAAKKKQQQQQEEPQPQQLQPQNPVVEGEAIATRTRRRRAAAAAGXXXXKKKEEEEEQAKVNEKVVVEKEEEKKGVEVGEGAEKEEVGEKQMDDLDSGGRSNKANAGEDEGTTAPLPEKVQVGGSPLYKLERKLGKGGFGQVYVGRRITGGNLNERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHSMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPNEKKLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASANAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTPPESLCCFCPHPFKLFVEHVVNLKFDEEPNYAKYISFFDGIVGPNPDIRPINTEGAQKLIGHKRARQAMEDDDDEQPKKKYRMGLPATQWISVYNARRPMKQRYHYNVSDQRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTSQVYELSYYFLHKEWIMEQWEKNYYISAIAGAANGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTSMATSLNRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITSTAATWDQAAFVLSVPRKKPADETQETLRTSAFPSTHVKEKWGKNLYIASICYGRTVS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30222g00034 704 PANTHER CASEIN KINASE-RELATED 133 669 - -
Stsc30222g00034 704 CDD STKc_CK1 140 416 - -
Stsc30222g00034 704 Pfam Protein kinase domain 140 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30222g00034 704 ProSitePatterns Protein kinases ATP-binding region signature. 146 179 IPR017441 GO:0005524
Stsc30222g00034 704 SUPERFAMILY Protein kinase-like (PK-like) 140 420 IPR011009 -
Stsc30222g00034 704 Gene3D Transferase(Phosphotransferase) domain 1 103 463 - -
Stsc30222g00034 704 FunFam casein kinase 1-like protein HD16 113 460 - -
Stsc30222g00034 704 Coils Coil 56 57 - -
Stsc30222g00034 704 Coils Coil 62 84 - -
Stsc30222g00034 704 MobiDBLite consensus disorder prediction 1 132 - -
Stsc30222g00034 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Stsc30222g00034 704 MobiDBLite consensus disorder prediction 60 109 - -
Stsc30222g00034 704 SMART serkin_6 140 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30222g00034 704 ProSiteProfiles Protein kinase domain profile. 140 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30222g00034 704 MobiDBLite consensus disorder prediction 20 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30222g00034 Stsc-Chr30222 215970 221313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30222g00034 139 359 EF-hand Containing Proteins AT4G21940 26.549 3.88e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Stsc30222g00034 Pkinase 2.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30222g00034 - - qsa:O6P43_018208 1162.52