Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30222g00031 ATGGAGGGGCCGGAATACTTCGTCGGTGGCTATTACGGCGCCGGAGGAGACCAATTCTCCACGGACAAGCGGCATGGCGTTGGCGCTGGAGACCAGAAGCACGGAGCCTGTGGCGGCGGCGGTGAGCCGTTTGCCATTGACGACCTACTCGACTTCTCCAACGCTGACGCCATCATGTCCGACGGATTCTTTGAAAATGTCGCCGGAAACTCCTCCACCGACTCGTCCACCGTCACCGCGGTTGACAGCTGTAACTCCTCCGTATCCGGTGGCGACAACCATTTCCCTGCCGGCATTGTCCCTCACGCATTCTCCTCCGGCGATCCACAATTCTCCGGCGGTGAACTCTGCGTTCCGTACGATGACATGGTGGAACTGGAGTGGCTCTCGAACTTCGCGGAGGACTCGTTCTCCACAGAAGAAGATCTGAAGACGCTGCAGCTTCTCTCCGGCGGTGGCGCCGCCGCCATCAACGGCAGAAAACCTCAGACGCCGGACTCATCATCTTCCTCGGAAAACGCGCTCCATCCTCCCTTCGACACCGCGCGAAACGCACCGTTTCTTCTTCATCAGGAGACGCCGCTCCCAGGGAAAGCCCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACGCGCCTGCTTCACCTCTCGACTCCTCCTCCGCCGCCTCCGGGGGAGCACAAGCCTCCGACACCGAAAGTGGCGGCACCGACGACGACGAAGAGGAGGGAGGCGAATGCGGAATGTTCGGGGAGAAAGTGTCTGCACTGCGGCGCTGATAAGACGCCACAATGGCGAACCGGGCCCATGGGCCCAAAGACTCTGTGTAACGCTTGCGGCGTGAGGTTTAAGTCGGGCCGACTTGTGCCCGAGTATAGGCCCGCGGCAAGCCCAACGTTCGTTTCAACTAAGCATTCGAATTCCCATCGGAAGGTTCTGGAACTGAGGAGGCAGAAGGATATGCAGCGGCAGCAACAGCAGCAGCAATTGATGAGTCAAACTTCAATTTTCGGCGTATCCAACGGTGGAGATGAATTCCTAATCCATCATCATCATCACCATCATCATCAACAACACCATTGTGGCCCTGATTTTAGGCATGTTATCTAG 1116 0.5869 MEGPEYFVGGYYGAGGDQFSTDKRHGVGAGDQKHGACGGGGEPFAIDDLLDFSNADAIMSDGFFENVAGNSSTDSSTVTAVDSCNSSVSGGDNHFPAGIVPHAFSSGDPQFSGGELCVPYDDMVELEWLSNFAEDSFSTEEDLKTLQLLSGGGAAAINGRKPQTPDSSSSSENALHPPFDTARNAPFLLHQETPLPGKARSKRSRAAPGDWSTRLLHLSTPPPPPPGEHKPPTPKVAAPTTTKRREANAECSGRKCLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKDMQRQQQQQQLMSQTSIFGVSNGGDEFLIHHHHHHHHQQHHCGPDFRHVI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30222g00031 371 CDD ZnF_GATA 255 302 IPR000679 GO:0006355|GO:0043565
Stsc30222g00031 371 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 313 - -
Stsc30222g00031 371 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Stsc30222g00031 371 PIRSF Txn_fac_GATA_plant 29 344 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc30222g00031 371 MobiDBLite consensus disorder prediction 154 181 - -
Stsc30222g00031 371 MobiDBLite consensus disorder prediction 161 177 - -
Stsc30222g00031 371 MobiDBLite consensus disorder prediction 193 251 - -
Stsc30222g00031 371 MobiDBLite consensus disorder prediction 218 233 - -
Stsc30222g00031 371 PANTHER GATA TRANSCRIPTION FACTOR 35 330 - -
Stsc30222g00031 371 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Stsc30222g00031 371 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Stsc30222g00031 371 Gene3D - 251 336 IPR013088 GO:0006355|GO:0008270
Stsc30222g00031 371 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Stsc30222g00031 371 FunFam GATA transcription factor 245 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30222g00031 Stsc-Chr30222 186672 188687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30222g00031 37 371 C2C2-Gata Transcription Factor Family AT4G32890 43.068 5.50e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc30222g00031 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30222g00031 - - aip:107619293 665.225