Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30222g00027 ATGACACTAACAACTTCTTCTTCATCTTCATCAATTTCTTCTTCTTCAGAAACATCTAGCACCAGCACCATTTCACCACCACCCTCACCCTCTTCATCTTCTTCTTCTCCCAAGAAGCAAAAAACAGAGCGTGCCAAGAAACAGAGCAAGGAGCCCAAGAAACCAAGAGACTGCAGCAAGCACCCGGTCTACCATGGCGTCCGCAAGCGCAATTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCTCGCAAGAAATCGAGGATTTGGCTTGGAACCTTCGCCACGCCGGAGATGGCCGCCAGAGCACACGACGTCGCTGCCTTGTGCATCAAGGGCCATTCCGCAATCCTCAATTTCCCCGAGCTCGCGGGGACGCTCCCCCGTCCCGTCACGTGCTCCCCACGTGACATACAGGTTGCGGCCACGGCCGCAGCCTCTATGGTCAACTTTGACTCCATTACTGCTGCGAAAAAATCTCAGCACCATCAAGAGGATGGCAATTCTCTTGACGATGCTGAGGCTTGCTCGCAGCAGCAAGCGGAATCTTCATCATTATCAATGTCTAGAGAGGCGGATTCGTCTGAATTGAGCGAGATAGTTGAGCTTCCGAATATTGAAGATGATGAAGGGTTTGATTCGGTTGAGTCAAGGAATGAATTCATTTGGTTTGACATGGTTGATAACAACAATGGTTGGGTGTATCCTCCAATGGGGTTAGAGGGTGCTGAATTCTGTGCAAATTTCGTTGCTGATAATAACTCTTTGATTCCAATTTGGGATGATTGA 786 0.4975 MTLTTSSSSSSISSSSETSSTSTISPPPSPSSSSSSPKKQKTERAKKQSKEPKKPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALCIKGHSAILNFPELAGTLPRPVTCSPRDIQVAATAAASMVNFDSITAAKKSQHHQEDGNSLDDAEACSQQQAESSSLSMSREADSSELSEIVELPNIEDDEGFDSVESRNEFIWFDMVDNNNGWVYPPMGLEGAEFCANFVADNNSLIPIWDD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30222g00027 261 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Stsc30222g00027 261 MobiDBLite consensus disorder prediction 39 64 - -
Stsc30222g00027 261 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Stsc30222g00027 261 MobiDBLite consensus disorder prediction 1 64 - -
Stsc30222g00027 261 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Stsc30222g00027 261 Pfam AP2 domain 62 113 IPR001471 GO:0003700|GO:0006355
Stsc30222g00027 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 212 - -
Stsc30222g00027 261 MobiDBLite consensus disorder prediction 170 190 - -
Stsc30222g00027 261 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Stsc30222g00027 261 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Stsc30222g00027 261 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30222g00027 261 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Stsc30222g00027 261 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Stsc30222g00027 261 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Stsc30222g00027 261 MobiDBLite consensus disorder prediction 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30222g00027 Stsc-Chr30222 151632 152620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30222g00027 31 236 AP2-EREBP Transcription Factor Family AT5G11590 51.942 3.58e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30222g00027 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30222g00027 K09286 - aip:107616595 365.54