Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30222g00013 ATGGCCGGTGCTATTTGTGGCCCAAATTTGGTCATCTTAGGCTCCATCAAAGCCTACATTGCTGAGTTCATCTCAACATTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCTATAGCCTATGGAAAGCTGACATCAGATGCAGCACTTGACCCAGCTGGATTGGTAGCAGTGGCTGTGTGCCATGGATTTGCTCTGTTTGTTGCAGTTTCAGTTGGTGCTAACATCTCTGGTGGGCATGTCAACCCTGCTGTCACATTTGGTTTGGCACTTGGAGGCCAAATCACAGTCCTCACTGGAATCTTCTACTGGATTGCTCAGCTTGTTGGATCCATTGTTGCATGTTTCCTCCTTTCTTATGTCACCGGTGGATTGACAACTCCTATCCACAGTGTGGCAGCAGGAGTAGGAGCATTTGAAGGAGTTGTGACTGAAATTGTAATCACATTTGGATTGGTCTACACTGTTTATGCCACAGCAGCTGACCCCAAGAAGGGCTCACTAGGCACCATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGCCGGTCCCTTCTCCGGCGGCTCCATGAACCCGGCTCGCTCCTTCGGCCCTGCCGTTGTGAGTGGCAACTTCCATGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGCCTTGCTGGCGTTATCTATGGCAATGTGTTCTTGTCCTCTTCCCATGCACCTCTTTCAAGTGAATTTTGA 741 0.4926 MAGAICGPNLVILGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGQITVLTGIFYWIAQLVGSIVACFLLSYVTGGLTTPIHSVAAGVGAFEGVVTEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWVGPLIGGGLAGVIYGNVFLSSSHAPLSSEF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30222g00013 246 PANTHER AQUAPORIN-8 14 239 IPR034294 -
Stsc30222g00013 246 NCBIfam MIP family channel protein 21 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 PRINTS Major intrinsic protein family signature 61 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 PRINTS Major intrinsic protein family signature 17 36 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 PRINTS Major intrinsic protein family signature 98 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 FunFam Probable aquaporin TIP1-1 8 246 - -
Stsc30222g00013 246 CDD MIP 17 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30222g00013 246 SUPERFAMILY Aquaporin-like 12 237 IPR023271 -
Stsc30222g00013 246 ProSitePatterns MIP family signature. 79 87 IPR022357 -
Stsc30222g00013 246 Gene3D Glycerol uptake facilitator protein. 9 244 IPR023271 -
Stsc30222g00013 246 Pfam Major intrinsic protein 15 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30222g00013 Stsc-Chr30222 60501 62806 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30222g00013 13 244 Major Intrinsic Protein MIP AT3G16240 81.974 1.58e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30222g00013 K09873 - gmx:100306092 432.95