Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30222g00010 ATGATGGCTGGGAACCCTAATAATTGGTGGAGCATGAATCCATCATCATCTTCTTTGATCCCTTATGCTCAATATGTTCTTGGATCTTCTCCTTCTCCTTCGTCTTCTTCTTCTTCAATTCCTTTTAATCCTTTGGTGCCAGAAATTCCAGCAGAACTACCTTCTTCTCAATCTTGGAGCCAACTTCTCTTCACTGGGTTACCAGGAGAAGAAGAGAGACTTGGATTCAATCATTTTGATCAATCAAAAAAGTTGGAAATATGGGATGACCATAACAACATCCTCATCAACAACAACAATAATCAACACAATAACAATAATAGTAATAATATTATTGTTGATGCAATAAAGCAAGAGGTTTCCCAAAGTGGAAACTTGTACGGCCATGGTAATGGTGGCCATGAGGAAGAATTTCATGGTTCAAATGGGTCAACTTGGTCAACACATATGCTTCCAATTAATTCTTCATCACCTAGCTCAAGTGTCACTACCAATAATAATATTAATATTAATAATAATGATAATTTGTTGGATTTTGCTTATAACAAGGTTGACCATAGGAAGAATCATCAACATCTACCTTATGCCACACCTGAGTGTAATAATAGCACACCTACTGCTGGAATTTGCAAGAAAGCTAAGAGTCAAACAACTTCAAGCTTACCACCATTGAAGGTGAGAAAGGAGAAGCTTGGTGATAGAATCACAGCACTTCACCAGCTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTGTTGTTAGAAGCCATTGGATATATCAGATTCCTTCAGAGTCAAATTGAGGCACTTAGTTCTCCTTACTTGGGTAATGGATCAAAAAACATGAGGAATAGACAATATGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACACTGGCCTAAAAAGAAAGGCAGCTTCAAGCCATAGCCAGGATTCTAAAGATACTAATAATAATCCAAGGGACTTGAGGAGTAGAGGGTTGTGCTTGGTACCTGTGTCCTTCACCCAACATGTTGGAAATGAAAATGGAGCTGATTTCTGGGCACCAGCATATGGTGGTGGATTCTAA 1098 0.3889 MMAGNPNNWWSMNPSSSSLIPYAQYVLGSSPSPSSSSSSIPFNPLVPEIPAELPSSQSWSQLLFTGLPGEEERLGFNHFDQSKKLEIWDDHNNILINNNNNQHNNNNSNNIIVDAIKQEVSQSGNLYGHGNGGHEEEFHGSNGSTWSTHMLPINSSSPSSSVTTNNNININNNDNLLDFAYNKVDHRKNHQHLPYATPECNNSTPTAGICKKAKSQTTSSLPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGNGSKNMRNRQYVHGERNSVFPEDPGQLLNDTGLKRKAASSHSQDSKDTNNNPRDLRSRGLCLVPVSFTQHVGNENGADFWAPAYGGGF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30222g00010 365 CDD bHLH_AtbHLH_like 225 272 IPR045239 -
Stsc30222g00010 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Stsc30222g00010 365 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 347 - -
Stsc30222g00010 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 276 IPR036638 GO:0046983
Stsc30222g00010 365 Gene3D - 225 286 IPR036638 GO:0046983
Stsc30222g00010 365 MobiDBLite consensus disorder prediction 292 333 - -
Stsc30222g00010 365 FunFam Transcription factor bHLH123 family 225 288 - -
Stsc30222g00010 365 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30222g00010 Stsc-Chr30222 41069 45679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30222g00010 176 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 57.143 2.46e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30222g00010 - - aip:107617848 484.567