Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00056 ATGGAAAAGGAGCCTCTGCTCCCATATTTTAGCCCAAGAAAGAAGCAATCACCATTAGCAAATTCGCTTTGTCCATTGCCGGAACATGATGAGGTTCTTCTTCCTGCTTCCCCTGCTTGGATCAAAGACCGACTCATCTTTGGCCCTTCCCCTCTTGGTTCTTCCCCTAGCGATTCTTCACCATTGGTTGAGGCCTTGGCACTTTCACAACCACCTTCTCCTTCTTGTTCTTCCTCTTCTTCACGGGACTTTGCATCAGCACTTCTTGAATCACAACAGTTTAACCAACAGCAACAGCAACAGCATCAATCTTCTTGGCTTATTGATCCTAATTATCCACGGCGCAAGTCCAATCTCCACCGCTCCAAAACTGCACCGGCTATGGCTGTGATCAGTGATTTCAGCAAGTGTAGTGCCCCCAAAAACAAAAGGCCACAATTTGGTAGCCAATCAATTGTTCACCAGGCTTTTCTCCTCCTTCTTCTTTATTTGTCATTAGGGGTAGTCATTTATTGGTTCAATCGTCATAGTTTTACAGTATCTGAGACTCATCCTGTAGTAGATGCATTATATTTCTGTATAGTTACAATGTGCACAATTGGATATGGAGACATCACACCAAATAGTACCATAACCAAGCTTTTCGCGATATTCTTTGTGTTGATTGGTTTTGGCTTTATAGACATATTGCTCAGTGGGATGGTTAGCTATGTACTTGATTTGCAGGAGAATCATTTGTTGAGGACAGTGAAGAGTCGGGGCGAAAAGGATGGGAGGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCACTGGCTGGACTAGTTGTTNNNNNNNNNNTATCTTGTATTGGAGTTGGTGTGGCGGTTTTGCATTTTGTGGAGAGGCTCAGCTGGCTGGATTCCTTTTATCTTTCTGTTATGTCAGTTACAACTGTTGGCTATGGTGATCACTCGTTTAGTACTATGCATGGCCGCATCTTCGCTGCGATTTGGTTGCTTGTGTCTACACTTGCGGTGGCCCGAGCATTCCTCTATTTGGCTGAAGCAAGAGTAGATAAGCGGCACAGGAAGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTGCTGAGTTTCTTGCTGCAGATATGGACAATAATGGATTTGTTAGTAAATCTGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCAGAGAAGGACATCATGCAGATCGGTGAGAAGTTCGATAGACTGGATACCGGGAACTGCGGAAAAATAACACTTGCTGATCTCATGGATGGTCGAAATTGA 1320 0.4326 MEKEPLLPYFSPRKKQSPLANSLCPLPEHDEVLLPASPAWIKDRLIFGPSPLGSSPSDSSPLVEALALSQPPSPSCSSSSSRDFASALLESQQFNQQQQQQHQSSWLIDPNYPRRKSNLHRSKTAPAMAVISDFSKCSAPKNKRPQFGSQSIVHQAFLLLLLYLSLGVVIYWFNRHSFTVSETHPVVDALYFCIVTMCTIGYGDITPNSTITKLFAIFFVLIGFGFIDILLSGMVSYVLDLQENHLLRTVKSRGEKDGRSYIIDVKKGRMRIRMKVALAGLVVXXXXSCIGVGVAVLHFVERLSWLDSFYLSVMSVTTVGYGDHSFSTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRKMAKWILGQDMTVAEFLAADMDNNGFVSKSEYVIYKLKEMGKVSEKDIMQIGEKFDRLDTGNCGKITLADLMDGRN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00056 439 Gene3D - 150 251 - -
Stsc30221g00056 439 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Stsc30221g00056 439 MobiDBLite consensus disorder prediction 51 81 - -
Stsc30221g00056 439 MobiDBLite consensus disorder prediction 1 27 - -
Stsc30221g00056 439 SUPERFAMILY EF-hand 374 435 IPR011992 -
Stsc30221g00056 439 SUPERFAMILY Voltage-gated potassium channels 150 238 - -
Stsc30221g00056 439 Pfam Ion channel 159 238 IPR013099 -
Stsc30221g00056 439 Pfam Ion channel 291 354 IPR013099 -
Stsc30221g00056 439 PRINTS Two pore domain K+ channel signature 195 223 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc30221g00056 439 PRINTS Two pore domain K+ channel signature 317 326 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc30221g00056 439 SUPERFAMILY Voltage-gated potassium channels 281 376 - -
Stsc30221g00056 439 MobiDBLite consensus disorder prediction 52 81 - -
Stsc30221g00056 439 FunFam Two-pore potassium channel 5 141 251 - -
Stsc30221g00056 439 FunFam Two-pore potassium channel 3 259 376 - -
Stsc30221g00056 439 Gene3D - 346 437 - -
Stsc30221g00056 439 Gene3D - 286 345 - -
Stsc30221g00056 439 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 159 413 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00056 Stsc-Chr30221 268907 272838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00056 4 437 Ion Channels AT4G18160 58.998 3.55e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00056 K05389 - gmx:100804249 623.239