Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00054 ATGTTCTGTGAGAAGCAGTTTGATCCATCTTCATACATGAGCTTCACTGAATGCCTTCAAGGAGGGATGGATTATAACTCCCTTGCAACTTCTTTTGGTTTGTCTCCTTCTTCATCGGAGGTCTTTTCATCCATCGAAGGCAACAATAATCAAAAGCCCGAAGGAATAGATGTATTACTAGGAAGTGGTAGTGGTGGCGGAGGTAGCGAAACCCTTGCAACAACCCTGAACTCATCGATCTCTTCGTCATCATCTGAAGCCGGTGGCGAAGAAGATTCTGGAAAGAGCAACAAAGATAGCCAAGCCAAAGAAGAAGCTTCAGGAGAAACCTCCAAGAAAGGAATAAATTACAGGAACAAGGAGAATAATAAGAAGAAAGGGGAGAAGAAGCAAAAGGAGCCAAGGTTTGCGTTCATGACAAAGAGCGAGGTTGATCATCTTGAAGATGGATACCGATGGAGGAAATACGGACAGAAAGCCGTTAAGAATAGCCCTTATCCAAGGAGCTATTACAGATGCACGACACAGAAGTGCAGTGTGAAGAAAAGGGTGGAGAGGTCATATCAAGATCCAAGCACTGTGATAACAACGTATGAAGGTCAACACAACCATCCAGTCCCCACTTCTTTGAGAGGGAATGCGGCTTCCATGTTCACACCTTCCATGCTTTCCATCTCAGCCCCCACTCCCCTCTCCGCCGCTTCCAACTTATTCCCTACTCACCAGGACCTCTTCGGTTCCCTCTCCTCCCACCACCACCATCACAACCATTCCTCTCTCTTTACCACCACCACTAATGCTGCTGGCTTATCGTCCTTGTTTTATAATCATCAGCAGAGCATTAACAACAATAACAACAACAGTAATAACTCTATCCTTCTCCATCAGAATAATAATAATAATAATAGCAATCATCAGCAGCAGCTTCCTCCTGAATATGGCCTCCTTCAAGACATGCTGCTCCCTTCCATGTTCCTCAAACAAGAGCCATGA 993 0.4502 MFCEKQFDPSSYMSFTECLQGGMDYNSLATSFGLSPSSSEVFSSIEGNNNQKPEGIDVLLGSGSGGGGSETLATTLNSSISSSSSEAGGEEDSGKSNKDSQAKEEASGETSKKGINYRNKENNKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPSTVITTYEGQHNHPVPTSLRGNAASMFTPSMLSISAPTPLSAASNLFPTHQDLFGSLSSHHHHHNHSSLFTTTTNAAGLSSLFYNHQQSINNNNNNSNNSILLHQNNNNNNSNHQQQLPPEYGLLQDMLLPSMFLKQEP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00054 330 Gene3D WRKY domain 131 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30221g00054 330 ProSiteProfiles WRKY domain profile. 142 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30221g00054 330 MobiDBLite consensus disorder prediction 37 51 - -
Stsc30221g00054 330 FunFam WRKY transcription factor 57 133 207 - -
Stsc30221g00054 330 SUPERFAMILY WRKY DNA-binding domain 139 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30221g00054 330 MobiDBLite consensus disorder prediction 280 309 - -
Stsc30221g00054 330 MobiDBLite consensus disorder prediction 67 90 - -
Stsc30221g00054 330 Pfam WRKY DNA -binding domain 148 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30221g00054 330 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 286 IPR044810 GO:0003700
Stsc30221g00054 330 SMART WRKY_cls 147 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30221g00054 330 MobiDBLite consensus disorder prediction 37 134 - -
Stsc30221g00054 330 MobiDBLite consensus disorder prediction 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00054 Stsc-Chr30221 251248 252876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00054 7 330 WRKY Transcription Factor Family AT4G18170 47.256 2.13e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30221g00054 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00054 - - gmx:100787050 332.028