Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00044 ATGGTGAAGATCTCGCTTGGTGGCTACGACGATGGGGAAGGACCTAGCAACCGCATCCAGAAGCGGCACAGGATTGAACCAGAAGATGGCGAATCAAGCACAACCCAAAAGGAGCACCGTGAAGGAGATGACCACCAGCCTAAAATCGCAGAGCATGACGAAAACCCTGTTGGATCTGTAACCGACGATAAGGATAGGTCCATTTCTGTCACCATCACCGACCCCGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGACTGCCCCTGTTTTCCAGTGTGAGAATGGTCATATTGCTTGCTCTAATTGCTGTGCCAGACTTGGCAACAAGTGTGCCATGTGCTCAATGCCCATTGGCTATAACCGCTGCAGAGCTATTGAGAAGGTTCTGGAATCTATTAAAATCTCATGCCTCAATGCAAAATATGGTTGTAAGCATATGTTTTGTTACAGTAAAAAAAATGAACATGAGAAGGAGTGTAAGTTTCTGCCATGTTTATGCCCTCACTCAGGTTGTGACTTTCTTGCTTCATCTGAGGAGTTATCACTCCACTTTAGACATAGACATATACATTCTGGAATACAGTTTGCGTACGATAAATTTTTCACAATATTCTTAAATAGTGACCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTGTTTCTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATTGGCCCCAAATCCAAGAGAGGGTTTCATTATGATATATTGGCTAGGTCACAGGGAAGCTCACTAATATTGCAGTCTTATACCAAGATCGTTCAAGGTCACTCTGCTGATGCCCCTTCAACAGGGATGCTGTTGATTCCTTCTGATTTTTTTGGTTCTGGACAAATCAAACTGGATATTCGCGTAAAGTCATGA 921 0.4256 MVKISLGGYDDGEGPSNRIQKRHRIEPEDGESSTTQKEHREGDDHQPKIAEHDENPVGSVTDDKDRSISVTITDPDVLDCCICYEPLTAPVFQCENGHIACSNCCARLGNKCAMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFCYSKKNEHEKECKFLPCLCPHSGCDFLASSEELSLHFRHRHIHSGIQFAYDKFFTIFLNSDHKTIVLQEKNDANLFLIHNNHELLGNLIHITCIGPKSKRGFHYDILARSQGSSLILQSYTKIVQGHSADAPSTGMLLIPSDFFGSGQIKLDIRVKS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00044 306 MobiDBLite consensus disorder prediction 15 61 - -
Stsc30221g00044 306 Pfam Seven in absentia protein family 123 271 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc30221g00044 306 SUPERFAMILY TRAF domain-like 133 304 - -
Stsc30221g00044 306 CDD RING-HC_SIAHs 78 116 - -
Stsc30221g00044 306 MobiDBLite consensus disorder prediction 1 66 - -
Stsc30221g00044 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 186 IPR013083 -
Stsc30221g00044 306 ProSiteProfiles Zinc finger SIAH-type profile. 133 191 IPR013010 GO:0008270
Stsc30221g00044 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 28 305 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00044 Stsc-Chr30221 202963 204414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00044 76 304 C3H Transcription Factor Family AT2G41980 27.755 2.86e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00044 K04506 - gmx:100778869 430.639