Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00043 ATGATAATTCAGTGTGAGAATGGTCATATTGCTTGCTCTAATTGCTGTGCCAGACTTGGCAACAAGTGTGCCATGTGCTCAATGCCCATTGGCTATAACCGCTGCAGAGCTATTGAGAAGGTTCTGGAATCTATTAAAATCTCATGCCTCAATGCAAAATATGGTTGTAAGCATATGTTTTGTTACAGTAAAAAAAATGAACATGAGAAGGAGTGTAAGTTTCTGCCATGTTTATGCCCTCACTCAGGTTGTGACTTTCTTGCTTCATCTGAGGAGTTATCACTCCACTTTAGACATAGACATATACATTCTGGAATACAGTTTGCGTACGATAAATTTTTCACAATATTCTTAAATAGTGACCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTGTTTCTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATTGGCCCCAAATCCAAGAGAGGGTTTCATTATGATATATTGGCTAGGTCACAGGGAAGCTCACTAATATTGCAGTCTTATACCAAGATCGTTCAAGGTCACTCTGCTGATGCCCCTTCAACAGGGATGCTGTTGATTCCTTCTGATTTTTTTGGTTCTGGACAAATCAAACTGGATATTCGCGTAAAGTCATGA 654 0.3823 MIIQCENGHIACSNCCARLGNKCAMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFCYSKKNEHEKECKFLPCLCPHSGCDFLASSEELSLHFRHRHIHSGIQFAYDKFFTIFLNSDHKTIVLQEKNDANLFLIHNNHELLGNLIHITCIGPKSKRGFHYDILARSQGSSLILQSYTKIVQGHSADAPSTGMLLIPSDFFGSGQIKLDIRVKS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00043 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 216 IPR044286 -
Stsc30221g00043 217 SUPERFAMILY TRAF domain-like 44 215 - -
Stsc30221g00043 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 97 IPR013083 -
Stsc30221g00043 217 Pfam Seven in absentia protein family 34 185 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc30221g00043 217 ProSiteProfiles Zinc finger SIAH-type profile. 44 102 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00043 Stsc-Chr30221 202963 204414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00043 2 215 C3H Transcription Factor Family AT2G41980 28.696 2.78e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00043 K04506 - gmx:100778869 333.183