Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00041 ATGGCTACCATTTCTGCAACTTGCTACCTCTTTATTCTGTCATGGTTATGCCCCACGACACTATGTGGAACTGTGTTAGAAGACCTCAAAAACTTGCACCCACCTCCAAAATTTAACTCCACAATCATCACAAACTGTCTCAATAACCCTTCTCTCAGGTACTGCAATTCCTCTCCTATGAACTTTGATGAAATATTCAAATTCACTATTGTTGCTAGCCATCTCTGCAATGAATCAAAGAACCCCAATTGCATAGAATCCTTTCCCAAAGGGAACTTCCCTATTGATGTTCTTCATTGCACTCAAATCCATGATCTTGATTTAAGCATCAATGAGTTTTCCGGTGATATTCCAATTCAGAGTTTCTCTCCTCTCACCAACCTCACTTTCCTTAACCTATCCTATAACTGCTTCTCTGAGAGTGAAGAACAATCTGATTCACAGTTCTTCAAAAGGTTTAATGCTTCAAGTTTTCTTCATTCTGGTGCACTCTTGGATCACAGGAAGTTCTTCACATTGAAGGTTGTGATCTTATTTGTTGGTTTTCCCATGCTTGTTATTCTAATGGTGATTTTCTTGGCATGGCTTTGTTTTCAAAGGCCTGATTTACTTCCAAGAAAACTTCAAAGAAGAAGGACTACCTTCACACCTGCAATACTAAACGCGGCGACATCTGGTTTTTCAAGCAGGAATTTAGTAGGGAAGAGTGATGTTGTTCACATCTACAAAGGGTTCTTGAGAGATGGAACCCAAGTGAAAATTGAGATGTATTGGGATGAGATATCAAGGGAGAAGTATAAAAAATTTGTTGAAGAATGCAAGGTGCTGTCTGAGTTAGACCACAAGAACATTGTTAGGGTACTAGGATGGTGTAAGAGCAGAAAATTCAGGGCTGTTATCACAGAATGGAGAAGAGAAGAGAATGTTGAAATGTGGTTATTATCAGAGTCTGCTCCACCACCACCATGGAGTCATAGAGTCAAAGTGTTAATGGGAGTTGTAGAATGCATGCGTTATCTGCAGAAGGAATGGCCTCAAGTTGACTATGATCTCAACACAAATAGTGTTCTACTGACTCAAGATTTGGAACCACTAATTTCCAGGTTCAGAGTTGTAGATCATAACACTAGTAGCACAAGAAATATATGCAAGTTTGGTGTATTCATGCTGGAAGTGATATTAAATAGGAAGGGTGAAGAGAAGTTTGAAGGTGATGCAGATGGGTTTATTAAGCACATGAGAAGAGTTGATCCTGAAGAGTTGCATCAGATGATTGATGAGAGAATGGAACTAAGTGAAACTAGTTTTCATCAAGCTAAACAGGCTATATCCCTTGGATTAATGTGCATAGAGAAATCAGGCAGTGAGCAACCGAGCTTGGCCTTCATATGTAATAGCATTGCCAGAGCCTACAAGGCTACCCTTGTTTTGCCATCTGCAAATCACACAAGATCTCATGCAGATAATAGATTCAGGGGACACAAGACATAA 1491 0.3964 MATISATCYLFILSWLCPTTLCGTVLEDLKNLHPPPKFNSTIITNCLNNPSLRYCNSSPMNFDEIFKFTIVASHLCNESKNPNCIESFPKGNFPIDVLHCTQIHDLDLSINEFSGDIPIQSFSPLTNLTFLNLSYNCFSESEEQSDSQFFKRFNASSFLHSGALLDHRKFFTLKVVILFVGFPMLVILMVIFLAWLCFQRPDLLPRKLQRRRTTFTPAILNAATSGFSSRNLVGKSDVVHIYKGFLRDGTQVKIEMYWDEISREKYKKFVEECKVLSELDHKNIVRVLGWCKSRKFRAVITEWRREENVEMWLLSESAPPPPWSHRVKVLMGVVECMRYLQKEWPQVDYDLNTNSVLLTQDLEPLISRFRVVDHNTSSTRNICKFGVFMLEVILNRKGEEKFEGDADGFIKHMRRVDPEELHQMIDERMELSETSFHQAKQAISLGLMCIEKSGSEQPSLAFICNSIARAYKATLVLPSANHTRSHADNRFRGHKT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00041 496 SUPERFAMILY L domain-like 92 163 - -
Stsc30221g00041 496 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 86 145 - -
Stsc30221g00041 496 Gene3D Ribonuclease Inhibitor 18 168 IPR032675 -
Stsc30221g00041 496 ProSiteProfiles Protein kinase domain profile. 227 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30221g00041 496 SUPERFAMILY Protein kinase-like (PK-like) 212 467 IPR011009 -
Stsc30221g00041 496 Gene3D Transferase(Phosphotransferase) domain 1 213 476 - -
Stsc30221g00041 496 Pfam Protein tyrosine and serine/threonine kinase 233 372 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00041 Stsc-Chr30221 188738 190532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00041 197 463 Receptor kinase-like Gene Family AT4G11490 23.026 1.00e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc30221g00041 PK_Tyr_Ser-Thr 5.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00041 - - ahf:112771647 866.3