Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00027 ATGGAGTCCATCTGGAAGATCAGAACTAAGACCAGCCACAGCAGCAGGAAGCCCAAGCTAGAGCGCCTCAACGCAAGAAAGAACATCAATTACAACCCACCTGAAACTCCTCATTCGACACCTTCTTCCTTCTCCTCTTCCTCTTCTTCTCTCCACCACCAAACTAGCTTTAGGGTTACCGACGGCGATTTCGACATAATCTTCCAAAGCCTCGGCCTTTCTGGCCCCGAAGATTTTGCTATCCCAACTGCAGATTGGGAAGCCAGGAAGCTTCGCTTTGCTTCTCCGTCTTCTAATGCTGCCGCTGAGCCCAAACAGGATGAAAATTCCGCTGAATTGGAATCTAGGGTTGTGCTTGATTCAGATTCCCAGCTTAAAAGTGACAACTTTTCGCGAGCAGTTGAAGTGGGAGGCTCCAAGTTTGGTGTTTCTTCAGATGTGAAGGTTTTGAGTGGTAAAAATGGAGATGGGGCTGGCGGGGGAGCGATTAAGGGTGCTAGGCCTCCGATTTTGAGGCCAATTGTTGATGGGGTTGGTTCGAATTGGGATTTGAAGAGGTCCTTTGGTCCCCAAGATAATTTTTCGCCTTCGTCTTCTGGTGAAATTGGCTTTGTTAATAGGGTGAGAAATGGGGACAGAAGCATGCTTTTTACGGATTCAGGTTCGTTCACTACGTCCCATGATGATGATAGTGATATTGGCGGGGAAAGAGCTTGTCCTTGTTCTGGTTCTGGCGCGGTTGATGCTTCCTTAAATGAGTGGTTTAACCGAACTTTCTCTTCGTGGCAAAAAGGTGACATTTTGGGAAAGGGGTCTTTTGGAACCGTCTATGAAGGTTTTACAGATGATGGATTCTTTTTTGCGGTGAAGGAAGCATCTTTGCTGGATGAAGGTAGTAACCAGGGTAAACAGAGCATTTTCCAACTTCGGCAGGAAATATCTCTTTTGAGTCGGTTTCGACATGAGAACATAGTTCGATATTTTGGCACTCAAGAGGACCAAAGTTCACTTTATATCTTCCTTGAATTCATGCCGAAAGGGTCATTGTTAAGTCTCTATCAGAAGTATAGTTTAAATGATTCTCACGTTTCTGCATACACATGGCAGATTTTGCATGGCTTGAAGTATCTTCACGATCAAAATGTGGTTCACAGGGATATCAAGTGTGCCAATATCCTGGTTGATGTAAATGGGTCCGTCAAACTTGCGGATTTTGGGTTGGCAAAGGCAACTAAATTTAATGATGTTAAATCAAGCAAAGGATCCCCATACTGGATGGCCCCAGAGGTTGTTAACTTGAAGAATGATGGGTATGGTCTAGCAGCTGATATATGGAGCTTAGGTTGTACGGTCTTGGAGATGTTGATAGGGAAACCTCCTTACTCTGATCTGGAAGGAATGCAAGCGTTATTTCGGATTGGGAGAGGAGAACCTCCACCTATTCCTGAAACATTATCCAAAGATGCCAGGGATTTTATTCTTGAGTGCTTACAAGTTAACCCAAGTAAACGCCCAACTGCGGCTCAGTTATTGGAACATCCATTTCTAAGGAGACAGTTCCTGTCTTCCTTTTCGGCAGCGTCGCCCCAAATTAAAAGCTTTAAGAGCCTATAG 1614 0.4486 MESIWKIRTKTSHSSRKPKLERLNARKNINYNPPETPHSTPSSFSSSSSSLHHQTSFRVTDGDFDIIFQSLGLSGPEDFAIPTADWEARKLRFASPSSNAAAEPKQDENSAELESRVVLDSDSQLKSDNFSRAVEVGGSKFGVSSDVKVLSGKNGDGAGGGAIKGARPPILRPIVDGVGSNWDLKRSFGPQDNFSPSSSGEIGFVNRVRNGDRSMLFTDSGSFTTSHDDDSDIGGERACPCSGSGAVDASLNEWFNRTFSSWQKGDILGKGSFGTVYEGFTDDGFFFAVKEASLLDEGSNQGKQSIFQLRQEISLLSRFRHENIVRYFGTQEDQSSLYIFLEFMPKGSLLSLYQKYSLNDSHVSAYTWQILHGLKYLHDQNVVHRDIKCANILVDVNGSVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNDGYGLAADIWSLGCTVLEMLIGKPPYSDLEGMQALFRIGRGEPPPIPETLSKDARDFILECLQVNPSKRPTAAQLLEHPFLRRQFLSSFSAASPQIKSFKSL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00027 537 Pfam Protein kinase domain 263 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30221g00027 537 FunFam Mitogen-activated protein kinase 1, putative, expressed 260 529 - -
Stsc30221g00027 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Stsc30221g00027 537 Gene3D Transferase(Phosphotransferase) domain 1 260 535 - -
Stsc30221g00027 537 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 13 526 - -
Stsc30221g00027 537 MobiDBLite consensus disorder prediction 1 51 - -
Stsc30221g00027 537 SUPERFAMILY Protein kinase-like (PK-like) 259 525 IPR011009 -
Stsc30221g00027 537 SMART serkin_6 262 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30221g00027 537 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Stsc30221g00027 537 MobiDBLite consensus disorder prediction 95 117 - -
Stsc30221g00027 537 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30221g00027 537 MobiDBLite consensus disorder prediction 29 51 - -
Stsc30221g00027 537 ProSiteProfiles Protein kinase domain profile. 262 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00027 Stsc-Chr30221 128058 132099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00027 19 518 MAP Kinase Kinase Kinase AT4G08500 46.181 1.41e-141 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc30221g00027 Pkinase 9.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00027 K13414 - aip:107631583 921.383