Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00017 ATGCGATTGGGCAATTCGGGGACGGAATATTATGTCATCATCGTACTCGTTCAGGACAGAACCCAGGGTGGTTACTCCGATTTTGTGGTTGTACATCAACGCTATTTGCTTCAATTTCCGGACAACCTACCCCTTGATGCCGGTGCCCCAATTCTGTGTGCTGGGATCACTGTGTATAGTCCTATGAAGTATTATGGCATGACAGAGCCGAGCAAGCATTTGGGAGTGGCCGGCCTCGGCCGCTTAGGCCACGTTGCCATCAAATTTGGCAAAGCATTTGGTCTCAAAGTTACTGTCATTAGTAGCTCTCCCAACAAGGAAGATGAAGCTATTCACGTTCTAGGCGCTGATTCATTCATTCTTTCCTCTGACCCCGAAAAGATGAAGGTGAGAATGAGATCATACAATCCCGAAAAGGTTTTTTGTGTTTAG 432 0.4676 MRLGNSGTEYYVIIVLVQDRTQGGYSDFVVVHQRYLLQFPDNLPLDAGAPILCAGITVYSPMKYYGMTEPSKHLGVAGLGRLGHVAIKFGKAFGLKVTVISSSPNKEDEAIHVLGADSFILSSDPEKMKVRMRSYNPEKVFCV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00017 143 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 64 112 IPR006140 GO:0051287
Stsc30221g00017 143 Gene3D - 54 134 - -
Stsc30221g00017 143 PANTHER ALDEHYDE REDUCTASE 20 135 IPR047109 GO:0016616
Stsc30221g00017 143 FunFam Cinnamyl alcohol dehydrogenase 54 137 - -
Stsc30221g00017 143 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 134 IPR036291 -
Stsc30221g00017 143 Gene3D - 19 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00017 Stsc-Chr30221 71483 73398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00017 3 132 Monolignol Biosynthesis Gene Families AT4G39330 64.615 4.33e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00017 K00083 - gmx:100819684 191.43