Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00007 ATGGAAGGGTTATGTAGGGTATTACAAGGGTTGAAGCCAATAATACTAATGTTATTTGTGCAGATGGCATTTGCTGCGGTGAATATTTTGTACAAGATGGCCATCAATGATGGAATGAGCATGACTGTTGCCACTGCTTATCGCCTCATCTTTGCATCTGCCTTTACTATCCTTGTTGCTATCATTTTTGAGAGAAAAAATAACAATAAAGCAAGGATTACTCCAAGGGTGCTTCTTTTGGAATTTCTCTGTGGACTGTTTGGAGGAACTTTATTTCTCAACTTTTACTTCGCCTCATTGGCTTTGATGCCAGCAACGTTTGTATTGGCCATCATTAATCTATGTCCAGCTCTCACCTTCATCATAGCAGTTATCTCGGGTTTGGAAAAATTGAACTTGGGAGCAGCAGCAGGGAAGGCCAAGATAACAGGAACACTAACTGGAATCACCGGTGCAATGGTCTTGACCTTCTACAAAGGCATACAAATTGATATTTGGTCTTCCCATATCAACCTCTTGCATCATCCACATGGCGGCGCTGATAATGGTAACGAATTATTGGGTTTTTCATATGCAATTGCAAGCTGCTCCTCTTTTGCATTGTGGCTCAACATTCAGGCTAAGGTGAATAAGGAATTTCCAAGGCAGCACACAGGCACAGCTCTAATGTGTTCAATGGCTGCACTACAATCCACCCTCTTTGCTCTCTTTGTTGATAGGGATTGGGCCCAATGGAAGCTATATTGGAATATCAGGCTCCTCACTGTTTCTTATGCAGGAATTGTGGCGTCTGGAATGGTGATTAATATTATTGCATGGTGTGTACATAAGAGAGGCCCTCTGTTTGGCTCTATTTTCAATCCTCTGCAGCTTGTGCTTGTGGCTATCGCTGCTTCCTTCTTGTTGAATGAGCATTTATATTTAGGAAGTGTGATTGGAGGAGTGTTGATAGTGAGTGGGCTATACTCAGTGCTTTGGGGGAACAGCAGAGAAACCAAACACAAGATTCAAGACCAGACTCAGTTATTAGAAGAAATCACAAGGGATCCTGTTCAAGTGATTGTTATGTCCCCACACAAAGAACAACAAAACAAGGACAACAAAACTCATCATCAAATTCAAAACCCCCTTTCTAATGAACAAGAATTGCCCCCTCCTCATAATAATAATAATAATAATATATCTTAG 1188 0.4116 MEGLCRVLQGLKPIILMLFVQMAFAAVNILYKMAINDGMSMTVATAYRLIFASAFTILVAIIFERKNNNKARITPRVLLLEFLCGLFGGTLFLNFYFASLALMPATFVLAIINLCPALTFIIAVISGLEKLNLGAAAGKAKITGTLTGITGAMVLTFYKGIQIDIWSSHINLLHHPHGGADNGNELLGFSYAIASCSSFALWLNIQAKVNKEFPRQHTGTALMCSMAALQSTLFALFVDRDWAQWKLYWNIRLLTVSYAGIVASGMVINIIAWCVHKRGPLFGSIFNPLQLVLVAIAASFLLNEHLYLGSVIGGVLIVSGLYSVLWGNSRETKHKIQDQTQLLEEITRDPVQVIVMSPHKEQQNKDNKTHHQIQNPLSNEQELPPPHNNNNNNIS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00007 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
Stsc30221g00007 395 MobiDBLite consensus disorder prediction 359 395 - -
Stsc30221g00007 395 PANTHER WAT1-RELATED PROTEIN 12 338 IPR030184 GO:0016020|GO:0022857
Stsc30221g00007 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 330 - -
Stsc30221g00007 395 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020
Stsc30221g00007 395 Pfam EamA-like transporter family 12 138 IPR000620 GO:0016020
Stsc30221g00007 395 MobiDBLite consensus disorder prediction 369 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00007 Stsc-Chr30221 23211 25085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00007 11 333 Nodulin-like Gene Family AT1G25270 41.718 4.88e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00007 - - qlo:115966522 358.992