Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30221g00001 ATGCTGGGAAGTGTTGATGTTTTGGGTTCCATTGATTCAAGCATCAATGGAGCAGGTGTAGTGGGATGGCTACCTGAGGATTTCAATCCAACTACGTTCATCCAAGAACTAGTTCATAACATTGATGACATTGTTGTCAATAACAAGTGTGACAGTCAGAATTATAAGAACAATAATGGTGAAAGGGAGAAGATAGTTCTGGGAAGAGATATGCATACGGTGTCCCTTGAAATCACTGAACCAGATCCTGATGATGAAGTTACAGGAGAAAGGGAAGCTTATATGGCTAGTGTTTTATCCAAATACAAAAAAACCCTCACAGAGAAAACCAATTTCCATCTAGGTTATCCGTATAATTTGGATTTCGACTACGATGCTCTGTGTCAGCTTCAGCACTTCTCCATAAACAACCTTGGAGATCCCTTTATCGAGAGCAACTACGGGGTCCACTCCAGGCAGTTCGAGGTTGGTGTTTTGGACTGGTTTGCAAGGCTATGGGAACTGGAAAAGAACCACTACTGGGGATACATTACTAACTGTGGCACTGAAGGAAACCTCCATGGAATCCTTCTTGGCAGGGAGGTGCTCCCAGATGGGATCTTGTATGCCTCTCAGGAATCACATTACTCAGTTTTCAAGGCTGCACGAATGTATAGAATGGATTGTGTCAAGGTCAACACTCTTCCCTCTGGCCAGATTGATTGCCATGATTTTAAGGCCAAGCTTCTTTCTAACAAGGATAAGCCTGCAATTGTTAATGTTAACATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATTTGGTTATAAAGAAACTTGAAGAAGCAGGATTCTCCCATGACAGATTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGCTACCTTTTGTTAAACGAGCTCCGAAAGTGAGTTTCAAGAAGGCAATTGGAAGTGTGAGTGTATCAGGGCACAAATTCGTGGGGTGCCCAATGCCATGTGGGGTGCTGATAACAAGATTGGAACACGTGAACGTGCTGTCAAGGAACGTAGAGTACCTTGCCTCAAGGGATGCAACAATCATGGGTAGCCGCAACGGTCACGCGCCACTGTTCCTATGGTACAGCCTAAACAGAAAAGGATACAGAGGATTCAGGAAAGAGGTTCAGAAATGCTTGAGGAACGCACATTACTTGAAGGACCGCCTTGTGGAGGCGGGGATCGGAGCAATGCTGAACGACCTCAGCAGCACGGTGGTGTTTGAGCGTCCCCATGATGAGGACTTCGTGAGGAAGTGGCAGTTGGCGTGCCAGGGGAACATAGCACATGTTGTGGTCATGCCAAGTGTCACCATAAGTAAGCTGGATGATTTTCTTGATGAGCTTGTGCAAAACCGTGCTCTCTGGTTCCGAGAAGGGAAATATCAGCCTCGTTGTATAGCTTCTGATGTTGGCATAAACAACTGCCTTTGTGCTTTGCATAGCTGA 1473 0.4521 MLGSVDVLGSIDSSINGAGVVGWLPEDFNPTTFIQELVHNIDDIVVNNKCDSQNYKNNNGEREKIVLGRDMHTVSLEITEPDPDDEVTGEREAYMASVLSKYKKTLTEKTNFHLGYPYNLDFDYDALCQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNHYWGYITNCGTEGNLHGILLGREVLPDGILYASQESHYSVFKAARMYRMDCVKVNTLPSGQIDCHDFKAKLLSNKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMLPFVKRAPKVSFKKAIGSVSVSGHKFVGCPMPCGVLITRLEHVNVLSRNVEYLASRDATIMGSRNGHAPLFLWYSLNRKGYRGFRKEVQKCLRNAHYLKDRLVEAGIGAMLNDLSSTVVFERPHDEDFVRKWQLACQGNIAHVVVMPSVTISKLDDFLDELVQNRALWFREGKYQPRCIASDVGINNCLCALHS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30221g00001 490 Gene3D - 129 371 IPR015421 GO:0003824
Stsc30221g00001 490 Pfam Pyridoxal-dependent decarboxylase conserved domain 200 406 IPR002129 GO:0016830|GO:0019752|GO:0030170
Stsc30221g00001 490 Gene3D Aspartate Aminotransferase, domain 1 372 461 IPR015422 GO:0003824
Stsc30221g00001 490 FunFam Serine decarboxylase 1 129 372 - -
Stsc30221g00001 490 PANTHER - 55 490 - -
Stsc30221g00001 490 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 314 335 IPR021115 GO:0016831
Stsc30221g00001 490 SUPERFAMILY PLP-dependent transferases 96 459 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30221g00001 Stsc-Chr30221 2859 4746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30221g00001 213 396 Calmodulin-binding Proteins AT1G65960 25.907 1.22e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30221g00001 K25193 - gmx:100792053 813.142