Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30220g00024 ATGATGATGACGATGATTGAAAAGCAAGATTTGGGTTTGAGTTTAAGCCTAAACTTGTTCCCTACTTCAAATCCACACCATCTTTCTTCTTCTTCTTCTTCTGGTGGTGCTTGCATTATTACTTCTTCCATGGATGGGAAGTCAGAAGCTGGACCGTTGTTCTTCCGTGGAATCGACGTGAACCGAGCGGAGGCAGAGGAGGATGAAGCGGCGGCGCTGTCATCCCCCAACAGCACAGTGTCAACCGTGAGCGGCGGCAAGAGGAGCGAAAGAGAAGACGGTGAAGACGAAGACGCCGAAACGTCCAGGAAGAAGCTCAGGCTATCCAAGGACCAATCTGCCATTCTTGAGGACACCTTCAAAGACCACAATACTCTCAACCCTAAGCAAAAACTGGCACTGGCAAAGCAGCTGGGGCTTAGACCAAGACAAGTTGAGGTCTGGTTCCAGAACAGAAGAGCTAGGACGAAGCTAAAACAAACAGAGGTGGATTGCGAGGTTTTGAAGAGATGCTGTGAGAATCTAACGGAGGAGAATAGGAAGCTACAGAGAGAGGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCTCACTTGTACATGCAAATGACCCCACCCACCACCCTCACCATGTGCCCTTCTTGCGAGCGCTTCGCCGTTCCCTCCGATTCCGCCACACCTGCTGCCCTGGGCCGTCACCATTCCATGGCCCAGGCCCAAAATCGGCCCGTATTAGGCCCATTTTCCTCCGCGGCTCCAATCTTGCAACGGTCCTTGGATGCATTCCATCATTGA 792 0.5164 MMMTMIEKQDLGLSLSLNLFPTSNPHHLSSSSSSGGACIITSSMDGKSEAGPLFFRGIDVNRAEAEEDEAAALSSPNSTVSTVSGGKRSEREDGEDEDAETSRKKLRLSKDQSAILEDTFKDHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRKLQREVQELRALKLSPHLYMQMTPPTTLTMCPSCERFAVPSDSATPAALGRHHSMAQAQNRPVLGPFSSAAPILQRSLDAFHH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30220g00024 263 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Stsc30220g00024 263 Pfam Homeobox associated leucine zipper 159 193 IPR003106 GO:0006355|GO:0043565
Stsc30220g00024 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 228 - -
Stsc30220g00024 263 Coils Coil 158 195 - -
Stsc30220g00024 263 SMART HOX_1 101 163 IPR001356 GO:0003677
Stsc30220g00024 263 FunFam Homeobox-leucine zipper protein HAT22 107 153 - -
Stsc30220g00024 263 Gene3D - 107 157 - -
Stsc30220g00024 263 PRINTS Lambda-repressor HTH signature 130 139 IPR000047 GO:0003677
Stsc30220g00024 263 PRINTS Lambda-repressor HTH signature 139 155 IPR000047 GO:0003677
Stsc30220g00024 263 SUPERFAMILY Homeodomain-like 95 160 IPR009057 -
Stsc30220g00024 263 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Stsc30220g00024 263 SMART halz 159 202 IPR003106 GO:0006355|GO:0043565
Stsc30220g00024 263 MobiDBLite consensus disorder prediction 66 106 - -
Stsc30220g00024 263 Pfam HD-ZIP protein N terminus 5 92 IPR006712 GO:0005634
Stsc30220g00024 263 Pfam Homeodomain 103 157 IPR001356 GO:0003677
Stsc30220g00024 263 CDD homeodomain 103 160 IPR001356 GO:0003677
Stsc30220g00024 263 MobiDBLite consensus disorder prediction 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30220g00024 Stsc-Chr30220 216238 217672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30220g00024 5 235 Homeobox Transcription Factor Family AT4G16780 57.308 5.39e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc30220g00024 HD-ZIP_N 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30220g00024 K09338 - gmx:100813367 306.605