Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30220g00017 ATGCGTATAGAAGAATTGAAGAGTGGTGGTGAGGTGGAAGGAAATGGAGAGGTTGAGAGGTCATCAAGCTTTCTGGGCTATGATGCAAAGAAGGTTTTGGTTGGAGCTGGGGCTCGCGCGCTTTTCTATCCCACACTGCTTTACAATGTTGTAAGGAACAAAATTCAGGCTGAATTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTTCCAATTGATGTTCCCCATCTGAAGGAGCTTGGTGTCCGTGGGGTTGTCACATTGAATGAGTCATATGAAACTTTGGTTCCAACTACATTATATTATGCTCATGGAATTGACCATCTAGTGATTCCTACTAGAGATTACTGTTTTGCTCCATCGTTGCATGATATATGCCGTGCTGTGGACTTCATACATGAAAATGCATTATCTGGACGCACTACATATGTCCATTGCAAAGCTGGGCGTGGTCGCAGTACAACTGTTGTTATTTGTTATCTGGTGCACCACAAACTAATGACACCGGAGGATGCATATGATTATGTGAAGTCAATTCGGCCGAGGGTGCTTCTAGCTTCGTCTCAGTGGCAAGCCGTTCAGGATTACTACTGCTCCCTCATGGGGACAAGATTTGTTGGACGTTCGCCTTTTGCAGATCTATTTGTAAAGGCTAAGGTTTCCGAGACTGCAATAGCTTCAAGAAATCATATGTTGTTTGACGATAATTCTGTTGTTGTGATAACTGAGTCAGATCTTGAAGGATATGATCCAAGCATTCAACTTCAAACTATGCCTAGTGAAATATGGGCAGATTTAAGTGTGGTTTACCGTGTAGGAGTTGCCGGACGGGCAGCACTTGCAAGAATCTCATGCCTTTGGCTGCGGTGTGGTCCGAACCAGAAGATTTCTACGGAGAAACTTAACAGTGATGGCAGTTGCTCAATCCGGAGTAATAACAACTTGGGAGGAATTAGTATCGATATCCATGTGTACTGA 996 0.4367 MRIEELKSGGEVEGNGEVERSSSFLGYDAKKVLVGAGARALFYPTLLYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPHLKELGVRGVVTLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHDICRAVDFIHENALSGRTTYVHCKAGRGRSTTVVICYLVHHKLMTPEDAYDYVKSIRPRVLLASSQWQAVQDYYCSLMGTRFVGRSPFADLFVKAKVSETAIASRNHMLFDDNSVVVITESDLEGYDPSIQLQTMPSEIWADLSVVYRVGVAGRAALARISCLWLRCGPNQKISTEKLNSDGSCSIRSNNNLGGISIDIHVY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30220g00017 331 SMART ptp_7 103 207 IPR003595 -
Stsc30220g00017 331 SMART dsp_5 64 205 IPR020422 GO:0006470|GO:0008138
Stsc30220g00017 331 CDD PTPMT1 61 203 IPR044596 GO:0004721
Stsc30220g00017 331 ProSiteProfiles Dual specificity protein phosphatase domain profile. 61 208 IPR020422 GO:0006470|GO:0008138
Stsc30220g00017 331 FunFam Dual specificity phosphatase domain protein 61 207 - -
Stsc30220g00017 331 Pfam Dual specificity phosphatase, catalytic domain 101 202 IPR000340 GO:0008138|GO:0016311
Stsc30220g00017 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 206 IPR029021 -
Stsc30220g00017 331 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Stsc30220g00017 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
Stsc30220g00017 331 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 294 - -
Stsc30220g00017 331 Gene3D Protein tyrosine phosphatase superfamily 61 207 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30220g00017 Stsc-Chr30220 156902 160520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30220g00017 30 331 Protein tyrosine phosphatase (PTP) family AT2G35680 59.164 2.64e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30220g00017 - - adu:107485250 603.979