Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30220g00010 ATGGCGAACCAAGCGGAAATCTCAGCCCTTAACCGCATCAAGCTGCATCTCTTGGGTGAACTCTCACCACTCGGAACACCAGAGTTCACTCAAAACAAACTCTTCCTTCAAATTGACCAACACTCAACAAACCCTAATTTCTCTTTTCATCAATCTCAATCTTCACCTACCGATTCCTCAATTTCTCTCGATCACTACTTCAACGATCTTCCCCTCTTTGAATTCGATTCAAAGCCTCAAGTCATCGACCTTGAATCCGACCACGAACCACCAAAAACCCTACCTCAAAATAATCCCCAATCCGAGACGACGAACAAGACTCCTCGCCTCAGCCGGAAACCGTCGCTGCAAATCTCGCTCCCGAAGAAGAAAACCGAATGGATTCAGTTCGGGAACAATCCGAAACCCGAGGCCGTGGAACCGTTCGTTCAGCAACAGCAGCAGCAGCAACCGGAGCCAGAGAAGAAGCACTACAGAGGCGTTCGCCAAAGGCCGTGGGGAAAATTCGCCGCCGAGATTCGTGATCCGAACAAGCGAGGATCCAGAGTGTGGCTCGGAACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGCGCCGCCTTCAAGCTCCGAGGATCCAAGGCGATCTTGAACTTCCCTCTCGAGGTTGAATCCCTAGCCACCTCTGCTTCTGCTTCCACATCCGGCGACGTCAGCGGTGATAGGAAGCGCCGCCGCGAAGAAGAGGAAGTGGCGCCGGTGGCGAAGGAGGAGGAAGTTGTTGAGGCGGTGATGCCGGTAGTGAAGAAAGAGAAGACGACTTCCGAATCGGAGGTTAACTGTATAGGGGAGCTTCCGTTAACGCCGTCAATTTGGACGGGGTTCTGGGACAGTGATTTGCATCCTCTGTAG 897 0.5307 MANQAEISALNRIKLHLLGELSPLGTPEFTQNKLFLQIDQHSTNPNFSFHQSQSSPTDSSISLDHYFNDLPLFEFDSKPQVIDLESDHEPPKTLPQNNPQSETTNKTPRLSRKPSLQISLPKKKTEWIQFGNNPKPEAVEPFVQQQQQQQPEPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVESLATSASASTSGDVSGDRKRRREEEEVAPVAKEEEVVEAVMPVVKKEKTTSESEVNCIGELPLTPSIWTGFWDSDLHPL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30220g00010 298 FunFam Ethylene-responsive transcription factor 2 156 217 - -
Stsc30220g00010 298 SUPERFAMILY DNA-binding domain 157 217 IPR016177 GO:0003677
Stsc30220g00010 298 PRINTS Ethylene responsive element binding protein signature 197 217 IPR001471 GO:0003700|GO:0006355
Stsc30220g00010 298 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Stsc30220g00010 298 MobiDBLite consensus disorder prediction 84 116 - -
Stsc30220g00010 298 MobiDBLite consensus disorder prediction 233 249 - -
Stsc30220g00010 298 PANTHER DNA-BINDING DOMAIN 107 250 IPR044808 GO:0003700|GO:0009873
Stsc30220g00010 298 ProSiteProfiles AP2/ERF domain profile. 157 215 IPR001471 GO:0003700|GO:0006355
Stsc30220g00010 298 Pfam AP2 domain 157 207 IPR001471 GO:0003700|GO:0006355
Stsc30220g00010 298 MobiDBLite consensus disorder prediction 140 161 - -
Stsc30220g00010 298 Gene3D AP2/ERF domain 156 217 IPR036955 GO:0003700|GO:0006355
Stsc30220g00010 298 SMART rav1_2 157 221 IPR001471 GO:0003700|GO:0006355
Stsc30220g00010 298 MobiDBLite consensus disorder prediction 223 249 - -
Stsc30220g00010 298 MobiDBLite consensus disorder prediction 91 114 - -
Stsc30220g00010 298 CDD AP2 156 215 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30220g00010 Stsc-Chr30220 110245 111294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30220g00010 1 295 AP2-EREBP Transcription Factor Family AT5G47230 42.903 2.66e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30220g00010 AP2 3.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30220g00010 K09286 - gmx:100800453 276.944