Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00030 ATGGAAGCTGTCACCTACGACTACCAATACAATGCCCAAGAGGAATTTAACTCCATTGCCAATCGCCGCCATTCTTCTTCCTCAGGAAAGCTATTCGTTGGAGGCATCTCTTGGGAGACCTCTCAAGTCCGAAGGCCTCGAGGCTTTGGCTTTGTAACATTTGCCAATTCGGCTGTTGCTGATGAAGTTTTGTCACAGGAGCATACCATAGATGGCAGAGTGGTTGAAGTGAAGAGGACTGTCCCTAGGGAGGACATGGAAGTTACTTGTGTATTTAGAACAAAGAAGATCTTTGTTGGTGGATTACCCCAGTTTTTCACTGATGATGAATTGAAGGAGTACTTTTCAACTTATGGTAATATTGTTGAGTGCCAAATCATGCTAGATCGTAAGACTGGAAGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCAGTTGAAAAGGTCTTTTCAGCTGGTAAAATACATGAACTTGGAGGCAAGCAGGTTGAGATTAAGAAAGCCGAGCCTAAAAGATCAGGAGCTGATAATAGTAGCTCCTCACAGAATCATATGGTGTTTCTGGCAATGGAATGGATGGATTTGGTGCACACAGTTCTAGAGGTCGTAATCATGGAAAATGGGATCAACCGTATACTAATTTTGGCATGA 660 0.4258 MEAVTYDYQYNAQEEFNSIANRRHSSSSGKLFVGGISWETSQVRRPRGFGFVTFANSAVADEVLSQEHTIDGRVVEVKRTVPREDMEVTCVFRTKKIFVGGLPQFFTDDELKEYFSTYGNIVECQIMLDRKTGRSRGFGFVTFDNEDSVEKVFSAGKIHELGGKQVEIKKAEPKRSGADNSSSSQNHMVFLAMEWMDLVHTVLEVVIMENGINRILILA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00030 219 SMART rrm1_1 96 169 IPR000504 GO:0003723
Stsc30219g00030 219 SMART rrm1_1 30 78 IPR000504 GO:0003723
Stsc30219g00030 219 SUPERFAMILY RNA-binding domain, RBD 21 86 IPR035979 GO:0003676
Stsc30219g00030 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Stsc30219g00030 219 Gene3D - 92 189 IPR012677 -
Stsc30219g00030 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Stsc30219g00030 219 SUPERFAMILY RNA-binding domain, RBD 94 181 IPR035979 GO:0003676
Stsc30219g00030 219 Gene3D - 41 87 IPR012677 -
Stsc30219g00030 219 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 43 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00030 Stsc-Chr30219 158087 159561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00030 47 174 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 2.36e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00030 K12741 - gmx:100818080 265.003