Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00025 ATGGCTGCACTTGTTCGAGCTCCACCCAAAGATTTCATGCTCATCAAGCATCAATGGGCTGCCACACGCATTCAGGCACTCTTTCGATCTTTCTTGGCTAGGAGAGCTTTGAGAGCCTTGAGGGCAGTGGTAAGGTTGCAAGCTATATTTCGAGGCTGGTTAGTCCGAAAGCAAGCGGTTGTTACTCTAAGGTGTATGCAGGCTCTTGTTAGAGTTCAGGCACATGTGAGGGCAAGGAAAGTGAGAAACTCTCCAGAAGGGAAAGCTGTGCAGAAATTGTTGGATGAACATCGCAGCCTTGCTGATCCGGTTAAGCAGGCTGAGCAAGGATGGTGTGACATTCCTGGAACTGCAGATGAAGTTAAAGCAAAGCTAAGATTGAGGCAGGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTATCCACACAGCAGTCAAGAGGGTGTGCTAGTCCAAACTCAAGAGCCTCTAAGGCAGAGGCAGTAACTCCTTTCAAGCATCAGAACCTAGACAATAAGAGCTTAGGAATCTGCTTGTTAGAAAACTGGATGATATCAAAGCCATGGGAGAGTCCAATCTCGAAGAAAAGTGATGATCACATTGTTCAATCAAGAAGGAATGGTGTCACAACCAGGATTTCAGTGAAATCTCTTCCAACGAGTCATTCGACTCCGTCGTCTTCGGCGATGAGCTCTGATTGCATGTATGATGATAGCCCTGCATCAACATGCACATCAGAGGAAAGAGGTGTTGTTCATAAGCCTAGTTACATGAATTTGACACAATCAACCAAGGCAAAATTGAAGTCTTGCAGGAGTTCTTCACAGAATTCAAAGGATTCTTATGTGTCTCATAGCACAACACTTGTGAATGGAGATGCTAGAAGCAGTGCTGGTTCTGATGCTTCAGTTAACTTGTGGAAGGGTGTTTGTTCAACACCTCTAAGGGCAAGTTATCAAAGAAGATATGTTAGGAGGTAG 987 0.4529 MAALVRAPPKDFMLIKHQWAATRIQALFRSFLARRALRALRAVVRLQAIFRGWLVRKQAVVTLRCMQALVRVQAHVRARKVRNSPEGKAVQKLLDEHRSLADPVKQAEQGWCDIPGTADEVKAKLRLRQEGAIKRDRAMAYSLSTQQSRGCASPNSRASKAEAVTPFKHQNLDNKSLGICLLENWMISKPWESPISKKSDDHIVQSRRNGVTTRISVKSLPTSHSTPSSSAMSSDCMYDDSPASTCTSEERGVVHKPSYMNLTQSTKAKLKSCRSSSQNSKDSYVSHSTTLVNGDARSSAGSDASVNLWKGVCSTPLRASYQRRYVRR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00025 328 ProSiteProfiles IQ motif profile. 17 45 IPR000048 GO:0005515
Stsc30219g00025 328 SMART iq_5 39 60 IPR000048 GO:0005515
Stsc30219g00025 328 SMART iq_5 16 38 IPR000048 GO:0005515
Stsc30219g00025 328 ProSiteProfiles IQ motif profile. 41 68 IPR000048 GO:0005515
Stsc30219g00025 328 PANTHER IQ-DOMAIN 5-RELATED 17 287 - -
Stsc30219g00025 328 Gene3D - 16 59 - -
Stsc30219g00025 328 Pfam IQ calmodulin-binding motif 19 38 IPR000048 GO:0005515
Stsc30219g00025 328 Pfam IQ calmodulin-binding motif 41 58 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00025 Stsc-Chr30219 144399 146180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00025 1 309 IQD Protein Family AT1G72670 49.387 2.96e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00025 - - gmx:100816492 386.726