Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00024 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGTCTCTGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACCTATGGTCATGGTTGTTGGAGTTCTGTCCCTAAACTTGCAGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTGAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCTGCCCTCATTATAGACCTCCATAGCATTCTAGGAAACAGGTGGGCTCAGATAGCAAAGCATCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCCTTTCCCATGAAGTCCTTGTTCCTTCTTTGGCCACATTTTCTGATCATCATCATATCCATCATCATGGCCTAATTCCCAATAATGCCTCCTTAGAAAGTTTCTTCCCTTTAACAACAACAGAAAACCCTACTATCCTAAACCCTCATCATCATCAGCTATACCTTCCATTAATCCCTTCTTCAATCCTTCAAGCCTTTGATCAACAAAATATTCTTGATACCAATAATAATGGCAACAACAATTTGCACCATAATGTTCATCAGAATAATAATCCAATGCCAGCAGAAACAGTAGTGCCAACTGTGAATCCATCTTTGTATGAAGATACATGGTCATCATCATTTGGAAGTGTGCTACCTCTTCAAGAAGACCATCATCATCAGAATCAGAACCAGATTTCCAAAAGTAATGATGCTATCACTGCCACACCAAATTATATTATTGATAAACTCATCATCAATAATCCAGTTAGTAACATATGGCAGCAGCACTTTGATCTTCATCACTTGGTGGAACCAGTTGTCCCAAAAATCTTTGATAACAACAACATTATTGAGGATTATCTTTGTGGATTACCATATTCATCACCTGATGCTTCATCATCACAACAACAAGATGCTCTTGCTAGAATCCAGTGTTATTCTACTACTACACCTGATGCTGCTGCTATTTATCCACAAGATCAAGCAATAACTCTTGTTGCTGCAAATCATCATCAGTTGGAACACATTATTGATAATAACAATAATAGTTCCCTCATCATGCCATCATCATTGCCATCATCAACATCTTCTTCATCAGCATCACTCTATCAAGCAGATCATCACGTTTAG 1182 0.3866 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIDLHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHEVLVPSLATFSDHHHIHHHGLIPNNASLESFFPLTTTENPTILNPHHHQLYLPLIPSSILQAFDQQNILDTNNNGNNNLHHNVHQNNNPMPAETVVPTVNPSLYEDTWSSSFGSVLPLQEDHHHQNQNQISKSNDAITATPNYIIDKLIINNPVSNIWQQHFDLHHLVEPVVPKIFDNNNIIEDYLCGLPYSSPDASSSQQQDALARIQCYSTTTPDAAAIYPQDQAITLVAANHHQLEHIIDNNNNSSLIMPSSLPSSTSSSSASLYQADHHV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00024 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30219g00024 393 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc30219g00024 393 CDD SANT 17 61 IPR001005 -
Stsc30219g00024 393 MobiDBLite consensus disorder prediction 372 393 - -
Stsc30219g00024 393 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Stsc30219g00024 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30219g00024 393 Gene3D - 69 116 - -
Stsc30219g00024 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc30219g00024 393 FunFam Myb transcription factor 69 116 - -
Stsc30219g00024 393 SMART sant 66 114 IPR001005 -
Stsc30219g00024 393 SMART sant 13 63 IPR001005 -
Stsc30219g00024 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc30219g00024 393 PANTHER MYB DOMAIN PROTEIN 55 1 269 - -
Stsc30219g00024 393 CDD SANT 69 109 IPR001005 -
Stsc30219g00024 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc30219g00024 393 Gene3D - 11 67 - -
Stsc30219g00024 393 FunFam MYB transcription factor 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00024 Stsc-Chr30219 132770 134240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00024 1 192 MYB Transcription Factor Family AT3G13890 65.025 1.63e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30219g00024 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00024 K09422 - gmx:102662609 375.555