Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00019 ATGACGAAAGGGAGGATCAGGGCAAGGATCCGCAGGAGCCATCTTTACACATTTGGTTGCATTCGGCCAACGACCACTGAGGAGGGTGGGCCGAATCCACTCCAGCTCCATGGTCCTGGGTATTCCCGAACAGTGTATTGCAACCAGCCACTAATCCATGAGAAGAAATCCCTATTTTACTGCAAGAATAACATATCAACCACCAAGTACAATGTCCTCTCGTTCTTGCCTAAGGCACTGTTCGAGCAATTCCGAAGGGTGGCTAACATATACTTCCTTTTGGCTGCTTGCCTCTCAGCCTCTCCAATTTCACCTTTCAGCCCTCTAAGCATGATTGCTCCTCTGGCATTTGTTGTCGGCCTTAGTATGGCGAAGGAAGCATTGGAGGATTCCCGAAGGTTCCTTCAAGATGTCAAGGTTAATAACCGGAAGGTTAGTGTCCATAAAAGTAATGGTGAGTTTGTCCCCAGGTCTTGGCAGAGAGTTATGGTTGGAGATGTTGTAAGAGTAGAGAAGGACGAATTTTTCCCAGCAGACTTGCTTCTACTTTCATCAAGTTATGAGGATGGGATATGTTATGTGGAAACAATGAATTTGGATGGTGAGACCAACTTGAAGGTTTATCCTCTTGATCCTAGTCAAATTCTCCTTCGTGATTCAAAGCTTAGGAATACTGATTATGTCTATGGTGTGGTCATTTTCACGGGTCATGATAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGCACAATAGAAAAAAAGATGGATCATATAATATACACTCTCTTTACCGTCCTCATATTGATTTCATTTATTAGTTCAATAGGATTTGTAGTGAAGACCAGGTTCCAAGTCCCAAAGTGGTGGTATTTGCGGCCAGATAACATTGAATACCAGTATGATCCTAAGAAGATTATGTTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTATGGATATCTGATACCGATCTCGCTTTATGTTTCAATTGAGATTGTGAAGGTGTTACAAGCATCCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGTACTCCAGCTGATGCACGGACATCAAATTTAAATGAAGAATTGGGTCAGGTAGATACTATCCTCTCTGATAAGACTGGAACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCTTATGGTGTGCGATCCAGTGAAGTTGAACTTGCTGCTGCAAAGCAGATGGCTTCTGATATGGAGGAGCAGGATATGGGATCGGATCTCTCTAATTTCCCCTTGATTAAGGGTAGAGTTCCACAGGAAAATGTTAGAAGAGCTGGAGAAATTGAACTGGAGACTGTTGTAACATCCAAAGGAGATGAGGATAAAAGACCTGCAATAAAGGGATTTGGTTTTGAAGACAGCAGACTCATGAATGGTAACTGGTTGAAAGATCGCAATGCAGATGTCATTCTATTGTTTTTCCGGATATTATCAGTTTGCCATACTGCCATTCCTGAGGTGAATGAGGAGACTGGCGTTTGTACATATGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGTTTCGAGTTTTGTAGAAGAACTCAATCAACTGTTGTTGTACGTGAAAAGTTTTCTGCCTCAGGAGAAGTGGTTGAAAGGGAGTATAAAATATTGAATCTGCTAGATTTTACTAGCAAAAGAAAGCGAATGTCCGTGATTGTTCGTGATGAGGAGGGAAACATTATTCTTTTTTGCAAAGGAGCAGACAGAGAGGCAATGCTTGAGGAGGTATCAGATCTTATGGAAAGAGAGTTGATTCTTGTTGGTGCAACTGCTGTGGAAGACAAACTACAGAAAGGGGTGCCTCAGTGTATTGATAAACTTGCTCAAGCTGGTCTCAAGATCTGGGTATTGACAGGAGATAAGATGGAAACTGCAATCAACATTGGTTTTGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGCATTACTCTAGATTCAAATTCAGTAACCAATGATCGCCTAGAGGTGGTCAAGGGCAACATCTTGAATCAAATTACCAATGCCGCACAAATGATAAAAATGGAGAAGGATCCACATGCAGCATTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGACATGAAGCATCAGTTTCTGGGATTAGCTGTTGATTGTGCATCCGTCATTTGCTGCCGTGTGTCTCCCAAGCAAAAGGCGTTGGTGACAAGATTAGTGAAAGAAGGAACTGGAAAGACCACCCTAGCAATAGGCGATGGTGCCAATGATGTTGGTATGATTCAAGAAGCAGATATTGGTGTGGGAATCAGTGGGGTTGAAGGTATGCAGGCTGTTATGGCTAGTGACTTTGCTATTGCCCAATTTCGGTTCTTGGAGAGGCTTCTGGTTATCCACGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGCTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGATTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTCACATCATTGCCTGTCATCTCACTTGGAGTTTTCGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCACTATATCAACAAGGACCCAGAAATTTATTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATTCGTCACTCATTATTTTCTTTCTCGTTATAATCATCTTCTATGATCAAGCATTCCGGAAAAATGGCCAAACCGCGGATATGGCTGCCTTGGGTACAACAATGTTCACTTGCATCATTTGCGCCGTCAACTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATCCAACACCTCTTTGTGTGGGGTAGCATAGGAACGTGGTACCTCTTTCTCTTGATATACGGCGTGCTTCCTCCGAAATATTCCAAGACTGCCTACCAGATATTGATTGAAGTTCTTGCTCCGGCTCCTATTTATTGGACAGCAACAGTTTTGGTAACAATTGCTTGCGTTCTTCCTTATCTTGCTCACATATCCTTCCAAAGATGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCGACACATGTGGACGAGAGAGAGCTCTAAGGCGAGACAAGAAACGAAGATCGGATTCACAGCAAGAGTGGAAGCCAAGATTAGGCATTTGAAAGGGAGGCTGCAGAAGAAGCAATCTGCATTAGGGGTTTCATCACCAACTTATACATAG 3366 0.4207 MTKGRIRARIRRSHLYTFGCIRPTTTEEGGPNPLQLHGPGYSRTVYCNQPLIHEKKSLFYCKNNISTTKYNVLSFLPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNNRKVSVHKSNGEFVPRSWQRVMVGDVVRVEKDEFFPADLLLLSSSYEDGICYVETMNLDGETNLKVYPLDPSQILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDHIIYTLFTVLILISFISSIGFVVKTRFQVPKWWYLRPDNIEYQYDPKKIMLAGMSHLITALILYGYLIPISLYVSIEIVKVLQASFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMASDMEEQDMGSDLSNFPLIKGRVPQENVRRAGEIELETVVTSKGDEDKRPAIKGFGFEDSRLMNGNWLKDRNADVILLFFRILSVCHTAIPEVNEETGVCTYEAESPDEGAFLVAAREFGFEFCRRTQSTVVVREKFSASGEVVEREYKILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADREAMLEEVSDLMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITLDSNSVTNDRLEVVKGNILNQITNAAQMIKMEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVIHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLIIFFLVIIIFYDQAFRKNGQTADMAALGTTMFTCIICAVNCQIALTMSHFTWIQHLFVWGSIGTWYLFLLIYGVLPPKYSKTAYQILIEVLAPAPIYWTATVLVTIACVLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDRHMWTRESSKARQETKIGFTARVEAKIRHLKGRLQKKQSALGVSSPTYT 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00019 1121 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1050 IPR023298 -
Stsc30219g00019 1121 Gene3D - 390 413 IPR023299 GO:0000166
Stsc30219g00019 1121 Pfam Phospholipid-translocating ATPase N-terminal 45 112 IPR032631 -
Stsc30219g00019 1121 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 481 601 IPR023299 GO:0000166
Stsc30219g00019 1121 FunFam Phospholipid-transporting ATPase 620 816 - -
Stsc30219g00019 1121 NCBIfam phospholipid-translocating P-type ATPase 601 1062 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc30219g00019 1121 Gene3D - 616 816 IPR023214 -
Stsc30219g00019 1121 Pfam Phospholipid-translocating P-type ATPase C-terminal 804 1054 IPR032630 -
Stsc30219g00019 1121 Coils Coil 406 426 - -
Stsc30219g00019 1121 SUPERFAMILY Calcium ATPase, transduction domain A 148 244 IPR008250 -
Stsc30219g00019 1121 Pfam Cation transport ATPase (P-type) 505 607 - -
Stsc30219g00019 1121 Gene3D - 377 389 IPR023214 -
Stsc30219g00019 1121 Gene3D - 114 246 - -
Stsc30219g00019 1121 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Stsc30219g00019 1121 PRINTS P-type cation-transporting ATPase superfamily signature 776 795 - -
Stsc30219g00019 1121 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 601 1074 - -
Stsc30219g00019 1121 SUPERFAMILY HAD-like 368 820 IPR036412 -
Stsc30219g00019 1121 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Stsc30219g00019 1121 NCBIfam HAD-IC family P-type ATPase 563 667 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30219g00019 1121 NCBIfam HAD-IC family P-type ATPase 748 857 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30219g00019 1121 NCBIfam HAD-IC family P-type ATPase 111 275 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00019 Stsc-Chr30219 102186 107529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00019 1 1113 Primary Pumps ATPases AT1G72700 67.455 0.0 1655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00019 K01530 - qsa:O6P43_027596 1701.03