Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00018 ATGGAGCCTCGCATTGCCAACAAGTTCCGTCTTGGTCGCAAGCTTGGTAGCGGATCATTCGGGGAGATCTATCTCGGGACTAACGTTCAGACTAATGAAGAGGTTGCAATTAAGCTTGAAAATATCAAAACCAAGCATCCTCAGCTGTTGTATGAGTCAAAGCTGTACAGAATACTACAAGGAGGAACTGGGATCCCAAATTTGAAATGGTTTGGTGTTGAGGGAGAATACAATGTCCTTGTTATAGACTTACTGGGGCCTAGCCTCGAGGATTTATTCAATTTCTGCAGTCGGAAATTGTCCTTGAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGGGTTGAATTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATGCCATTGACTTCGGTCTTGCTAAGAAATACAGAGACAGCTCTACCCATCAGCATATTCCGTATAGAGAGAATAAAAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCGCTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCATGGCAGGGATTGAAAGCAGGTACTAAGAAACAGAAGTATGATAAAATCAGCGAGAAGAAAGTTTCTACTTCCATTGAGTCTCTCTGCCGTGGCTATCCCTCGGAATTTGCTTCATATTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATCTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCCATACGTCCTGTTGGTCTTCCTCCTGGGCCGAGTTCTGGCATGCCGCCAGCTGCTTTGAATGCTGATAGGCAGTCAGGTGGAGAAGATGGTAGGCATACTGGTTTGTCTTCATCAGATCTTACTCGTAGAAGGAACTCTGGACCTATTGTAAATGATGGAAACTTATCTAGACAGAAAGCCCCTGTTACAAATGACACTACAAGATCTAAAGATGGGATGTTGTCTAGCTCTAATTTCTTCCGGTCAAGTGGATCTACAAGGAGAGCTGCTTTCTCTCGTGAAGCAGTTGGCAGTGGTACCGAACAATCTCGTTCTCAGACCGTGGATGCAAGTCCAGTAGCACTCCAGAAAATATCTGGCGCCCAGAAAAATTCACCTGTCATCTCTTCTGAGCAGAACCGGGCATCTTCTGGCATAAGCACATCAAACATAAGGAATTTTGAGTCAACTCTTAGAGGATTTGAGAATTTGAATCTCAATGAGGAGAGGGTAAAGTAG 1410 0.427 MEPRIANKFRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLENIKTKHPQLLYESKLYRILQGGTGIPNLKWFGVEGEYNVLVIDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPIRPVGLPPGPSSGMPPAALNADRQSGGEDGRHTGLSSSDLTRRRNSGPIVNDGNLSRQKAPVTNDTTRSKDGMLSSSNFFRSSGSTRRAAFSREAVGSGTEQSRSQTVDASPVALQKISGAQKNSPVISSEQNRASSGISTSNIRNFESTLRGFENLNLNEERVK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00018 469 FunFam Casein kinase I isoform delta-like 1 308 - -
Stsc30219g00018 469 MobiDBLite consensus disorder prediction 304 392 - -
Stsc30219g00018 469 CDD STKc_CK1_delta_epsilon 8 282 - -
Stsc30219g00018 469 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Stsc30219g00018 469 MobiDBLite consensus disorder prediction 423 445 - -
Stsc30219g00018 469 PANTHER CASEIN KINASE-RELATED 13 394 - -
Stsc30219g00018 469 FunFam Putative Casein kinase I 1 85 - -
Stsc30219g00018 469 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30219g00018 469 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30219g00018 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc30219g00018 469 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Stsc30219g00018 469 MobiDBLite consensus disorder prediction 334 392 - -
Stsc30219g00018 469 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc30219g00018 469 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00018 Stsc-Chr30219 96739 100942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00018 7 223 EF-hand Containing Proteins AT2G17890 26.667 2.65e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc30219g00018 Pkinase 7.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00018 K02218 - gmx:100778165 783.097