Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00012 ATGGCTGCTTCTAAAATCATGCATGACGTCTTCGTCAGCTTCAGAGGCACAGACACTCGCAGTGATTTCCTCAGCCATTTGAGAGAGTCTTTAGAGGACAAGCAAATCGTGACATACGTGGATGACAAGCTCAAGGAAGGAAATGACATATCATCCTCGCTCCTTACAGCCATTGAACAATCAGAAATTTCTTTGATCATATTCTCCCACGATTATGCTTCTTCCAATTGGTGTTTGGATGAGCTAGTCAAAATAATGGAATGCAGGAGACAGAATGGTCAAATTGCAATCCCCATATTTTATAAGGTAGATCCTTCATGGGTGCGCCACCAATTGGGAAGTTATCACGATGCACTTGTTAATCATCAGATAAGATTTGCACACAAGGTTCAAATCTGGAGGGATGTTCTCAAGGAAGCTGCTAATTTGTCTGGATTCCATTATTCCACATCTTCAGAATTCAGGGATGAGGCTGAACTTGTTAAGGAAATTGTCAAACGTGTTTCACAAAGGTTAAACCAAACTTGCCAAGGTGATCTGCAGGGTCTTGTAAATCATGAAGCAATTGCAAGGCTAGAATCATTATTGTGCATGGAATCAGATGCTGTTACCATTACTGGCGTTTGGGGCATGGGCGGTATTGGTAAGACAACTCTTGCTACTGCAGTTTTCAATAGATTGTGTGATGGATTTGAAGGATTTTGCTTTTTGAATAATGTAAGAGAAAGAGCTCAGAAATATGGTATAGATCATTTGAAGACAGAACTTCTCTCCAAATTGCTAAAGGAACAAGATGCAAGTCAATATGTCACGCCTGGTGGAATAAATAATTTCGCCAAGAGAAGACTTAGTCGAACAAAGGTTCTTGTTGTTCTTGATGATGTCGATGATTCTGTCCAAATGGCAGATATATGTGGAGGACATGCATGGTTCGGGCCAGGTAGCAGAATCATAGTGACAACAAGAGATAAGCATGTCCTTGTTAAGGAGGACGCTGATCATATACATGTAGTTGAGGCACTGAATTCTGATGAATCTCTTCGGCTATTCAACATGAATGCCTTTAAGCAACACTGCACTGTAAAAGCAGAACAGGTTGAGTTGTCCAAGAGGGTTCTCAACTATTGCAAAGGCCTCCCTTTAGCATTAAAAATCTTGGGTTCTTTCCTTAAAGGAAAAACTCAACTAGAGTGGGAAAGTGAACTGGCCAAACTTGAAAAGATGCCTGATGGGAAAATCCAGAGTGTATTGCGATTGAGTTATAATGACTTAGATCGTAATGATGGGAATATCTTTTTGGATCTTGCATGTTTCTTTGATCCAAATACAGAAGAAGAGCAGCTAAAATTTATTCTTGATTGCTGTGGATACACAGCTACCATTGGGTTGACAAATCTTCGTAATAAAGCTCTTATTTCCATCTCAAATGGTTGTGTTTCAATGCATGACTTAATTCGAGAAATGGGCCGCGAAATTGTTCACGAAGAATCTCCGAAGGATCCAGCAAAACGCAGTAGATTGTGGGATGCCCGTGATATCTATGAAGTTTTGAAAAACAATAAGGGAAGTGAAGTTATTGAAAGTATCACATTAAACATGGCAGAAATTGAGACCATAAGCTTACAGCCTGGGACATTTGAAAGAATGCCAGCACTGAAGCTTTTTAGATTTCATACATCTGAATCCACAAACAAGTTGCTTGCTCCTCAAGGTATTACATCCATGTCAAACGAGTTAAGGTATTTTCAATGGGATCGGTGCCCTTTGAAATCTTTGCCACCTTCTTTAAGTATTGAGAAAATTGTTGAATTCATAGCACCCAACAGTGAATTGCAAACGCTTTGGGAAGATAAACAGAATCCGGTAAATCTAAGGAAAGTGGAAATTGATGGTTCTTCAAGCCTAATCCAGCTCCCAGATTTATCCAAAGCTTCAAAGCTTACAGAAGTGAGTATCTCCGGTTGCAACAGTCTGCATCAATTTCCTTCATTTGCTGTATCTTCCCAGAAGCTGAAATACCTCGACCACAGCAACTGTAGGAGCCTTGAGTCCACAGAAGAGCTTCCACCATCGGTTGTGTCCATAACCGCTCGCAACTGCTTCTCGCTACAAACTGTATCTGTATCTGCTTTGGATTCTGTGGCCCCGGAGGAGCAATTTGAGGATATAAACCTCAATTACACCAACTGCATATATTTGGATGAGAATTCAACAAAAAACATCACAGAACATGCCTATAACAAACTCAAGCAAGCACTAGCAGCAACACCTACATTTGCTACAAAAACACGGCTGGAGGATAGCGATAAGTTTTTTGGTTGGTGGAAGGCCGACAAGCACAATCATCCAAAGTTAAATATCTTGTCAGGTGCGAACCTGGATTGGTTCAGATATAGGAACCCACAAAACGGGGCTGTTACCATTGATGTTGTCCCAGGTGATTGCTTGTTGGGTTTCATCTTTTTCATCGTTTTTCCTGCATACAATGGGAGTTACGAAGTGGAAGCCACTTCAGTGTCATACGAGTATTGTGTTGAAGTGAGTGATGGCCCAAGTTTCAGTTATGAAAGTTATTCTATGGTAGGCGAGATTATATGGTTTCACACTGACTATGCTTGGTACGACGGGCAATGCTGCAGAGACATGATGAAGGTAATGGGAGAAAGCAGCAAGACTATTCAACTCAAACTTTCATTCAAGTTCTTGTACAGTCGTCTTGTTTTGAGTCAGCCTATTGAGGAAGATGATGACCAACAAGTACAAAATTGGGGTGTTCACCCAATATATGCCTCAGATGTTCTTAACTGA 2808 0.4078 MAASKIMHDVFVSFRGTDTRSDFLSHLRESLEDKQIVTYVDDKLKEGNDISSSLLTAIEQSEISLIIFSHDYASSNWCLDELVKIMECRRQNGQIAIPIFYKVDPSWVRHQLGSYHDALVNHQIRFAHKVQIWRDVLKEAANLSGFHYSTSSEFRDEAELVKEIVKRVSQRLNQTCQGDLQGLVNHEAIARLESLLCMESDAVTITGVWGMGGIGKTTLATAVFNRLCDGFEGFCFLNNVRERAQKYGIDHLKTELLSKLLKEQDASQYVTPGGINNFAKRRLSRTKVLVVLDDVDDSVQMADICGGHAWFGPGSRIIVTTRDKHVLVKEDADHIHVVEALNSDESLRLFNMNAFKQHCTVKAEQVELSKRVLNYCKGLPLALKILGSFLKGKTQLEWESELAKLEKMPDGKIQSVLRLSYNDLDRNDGNIFLDLACFFDPNTEEEQLKFILDCCGYTATIGLTNLRNKALISISNGCVSMHDLIREMGREIVHEESPKDPAKRSRLWDARDIYEVLKNNKGSEVIESITLNMAEIETISLQPGTFERMPALKLFRFHTSESTNKLLAPQGITSMSNELRYFQWDRCPLKSLPPSLSIEKIVEFIAPNSELQTLWEDKQNPVNLRKVEIDGSSSLIQLPDLSKASKLTEVSISGCNSLHQFPSFAVSSQKLKYLDHSNCRSLESTEELPPSVVSITARNCFSLQTVSVSALDSVAPEEQFEDINLNYTNCIYLDENSTKNITEHAYNKLKQALAATPTFATKTRLEDSDKFFGWWKADKHNHPKLNILSGANLDWFRYRNPQNGAVTIDVVPGDCLLGFIFFIVFPAYNGSYEVEATSVSYEYCVEVSDGPSFSYESYSMVGEIIWFHTDYAWYDGQCCRDMMKVMGESSKTIQLKLSFKFLYSRLVLSQPIEEDDDQQVQNWGVHPIYASDVLN 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00012 935 Gene3D - 2 178 IPR035897 -
Stsc30219g00012 935 Gene3D - 181 338 IPR027417 -
Stsc30219g00012 935 SMART till_3 7 143 IPR000157 GO:0007165
Stsc30219g00012 935 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 174 - -
Stsc30219g00012 935 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Stsc30219g00012 935 SUPERFAMILY L domain-like 481 732 - -
Stsc30219g00012 935 PRINTS Disease resistance protein signature 376 390 - -
Stsc30219g00012 935 PRINTS Disease resistance protein signature 666 682 - -
Stsc30219g00012 935 PRINTS Disease resistance protein signature 205 220 - -
Stsc30219g00012 935 PRINTS Disease resistance protein signature 282 296 - -
Stsc30219g00012 935 Pfam TIR domain 8 177 IPR000157 GO:0007165
Stsc30219g00012 935 Gene3D - 340 425 IPR042197 -
Stsc30219g00012 935 Gene3D Ribonuclease Inhibitor 498 718 IPR032675 -
Stsc30219g00012 935 Pfam NB-ARC domain 192 423 IPR002182 GO:0043531
Stsc30219g00012 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 435 IPR027417 -
Stsc30219g00012 935 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 146 IPR035897 -
Stsc30219g00012 935 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 738 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00012 Stsc-Chr30219 62561 67377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00012 8 707 WRKY Transcription Factor Family AT4G12020 29.876 6.78e-85 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00012 - - adu:107461399 1332.01