Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00011 ATGGCTTCTTCACCATCCATTATGTATGATGTGTTCTTGAGTTTCAGAGGCACAGACACTAGGAGAGGTATTCTTAGCCATTTGGTTAAGGCTTTGAACCAAAAGCAAATTGAGACATATGTGGATTACTTGCTGAGGGAAGGAACTGAAATATCACAATCACTTCTCACAGCCATTGAACAATCACAAATCTCTTTGATCATATTCTCCCAAGACTATGTTTCTTCCAGATGGTGCTTGGATGAACTTGTCACCATAATGAGATGCAGGAAACAAAATGGCCAGATTGCAATACCTGTTTTCTATGAAGTGGATCCATCTTGGGTTCGCCATCAGAAGGGAACTTATCATGATGCATTTGCTCATCATGAGAAAAATTCATCAGAGGACAAGCTTCAAATATGGAGACAAGCTCTCAATCAAGCTGCTAATTTGTCTGGATTGCATTCATCAAACTTTGGAAATGATGCTGAATTTGTTGAGGAAATTGTGAAACGTGTGTTGCAAAGGTTGAACCAAGCATACCAATATGATCCAAAAGAATTTGTGGGAATTCATGAACCAATTGCAGAGCTAGAATCAGTATTGTGCAGGGAATCCAAAGCTGTTCTTGTTATTGGACTTTGGGGCATGGGCGGTATCGGTAAGACAACTCTTGCAAGCATGCTTTTCAACAGATTGCAGTTTGAATTTCAAGGTACATGCTTTCTGGAGAATGTAAGGGAGAGAGCTCAGAGATATGGCATGACTCATCTGAAGAAAGAGCTTCTTTCTAAACTGCTAGATGAAAAAGATGTAGACCCTTTCATTATGCCTAATGGGATAACCAATTTTGCCAAGAGAAGACTCAGTAGAAAGAGAATTCTTCTTGTTCTTGATGATGTCAATGATGCAGACCAATTGGAAGATTTATGTGGAGGAGGATTTGAATGGTTTGGACCAACTACTAGGATTATAGTAATAACAAAGGATAAGCATGTGTTACTTGTTGAACAAGTTAATCACATTCATGAGGTTAAGCCATTGAATGATGATGAATCTCTGAAGCTTTTTAATTTGAATGCCTTCAAACAGAACTATGACATTGAAAGAGGCCAAACTCATGTTGAGCTGGCCATGAAGCTGGTTAACTATGCTAATGGCATTCCACTGGCTTTAAAAGTTTTGGGCTCCTCTCTTTATGGAAATAGCAAAGAAGAGTGGGAAAGTCAACTCTCTAAGCTTGAGAAAATGCCTCATGTCAAGATTCAGAATATATTGAGAGTGAGTTATGATGACTTGGATCGTCATGATCAAAATATTTTTTTGTATATTGCATGTTTCTTTGAAACATATAATGCAGAAAAGATTAAATGTCTGCTTGATTCTTGTGGATATTCAACAGCCATTGGGTTGAGAAATCTTCATGATAAAGCTCTTATTTCCATGGCCCCAAAATTGATGACAATGCATGACTTGATTCGTGAGATGGGCCGCGAAGTTGTTCGTGAAGAATCTCCGAGTAGTCCTGGAAATCGTAGCAGATTATGGGATCCCATTGAAATCTATGAAGTATTGAAACATAACAGGGGAACTGAAAGTGGTGAAAGCATAACATTTGACATGGCGAATATTGACATGGATTTGAGTTTGCATCCCCGGGCATTTGCAAGAATGTACAAGTTGAAGTTTCTGAGCATTTATTTTTCGAGGAGTGGGGAAAATCTGTTGCGTGCTCCTCAAGGTATTGAGTCTGTTTCAGAAGAGTTGAGACTTTTGGAATGGATTGCATGCCCTTTGAAATCTTTGCCATCATCTTTCTCTGCTGAGAACCTTGTTAAAATCATGATGATGTATAGCAGCTTGGAAAAGCTTTGGGATGGTGTCCAGAATATTGTAAATTTAAAGGAAGTATATCTTCAAGGGTCTAGGAATCTAATGGAGTTGCCAGATTTGTCAAGAGCCTCAAAGCTTCAAGTATTAAACGTTTCCGAGTGTGTGAATCTGTGCCGAGTTCCCCCATCTATTGCATCATGCCACAATCTGGTTGAGCTCTATGTCCATGGATGTTGTAAACTCAGCAGTTCCCTGGCAAGCAAGTTGCAGGTTGGTTCAGTCATAGAAGTAGAACCACAGAGACCATGA 2124 0.3931 MASSPSIMYDVFLSFRGTDTRRGILSHLVKALNQKQIETYVDYLLREGTEISQSLLTAIEQSQISLIIFSQDYVSSRWCLDELVTIMRCRKQNGQIAIPVFYEVDPSWVRHQKGTYHDAFAHHEKNSSEDKLQIWRQALNQAANLSGLHSSNFGNDAEFVEEIVKRVLQRLNQAYQYDPKEFVGIHEPIAELESVLCRESKAVLVIGLWGMGGIGKTTLASMLFNRLQFEFQGTCFLENVRERAQRYGMTHLKKELLSKLLDEKDVDPFIMPNGITNFAKRRLSRKRILLVLDDVNDADQLEDLCGGGFEWFGPTTRIIVITKDKHVLLVEQVNHIHEVKPLNDDESLKLFNLNAFKQNYDIERGQTHVELAMKLVNYANGIPLALKVLGSSLYGNSKEEWESQLSKLEKMPHVKIQNILRVSYDDLDRHDQNIFLYIACFFETYNAEKIKCLLDSCGYSTAIGLRNLHDKALISMAPKLMTMHDLIREMGREVVREESPSSPGNRSRLWDPIEIYEVLKHNRGTESGESITFDMANIDMDLSLHPRAFARMYKLKFLSIYFSRSGENLLRAPQGIESVSEELRLLEWIACPLKSLPSSFSAENLVKIMMMYSSLEKLWDGVQNIVNLKEVYLQGSRNLMELPDLSRASKLQVLNVSECVNLCRVPPSIASCHNLVELYVHGCCKLSSSLASKLQVGSVIEVEPQRP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00011 707 Pfam NB-ARC domain 191 427 IPR002182 GO:0043531
Stsc30219g00011 707 Pfam Leucine Rich Repeat 604 623 IPR011713 -
Stsc30219g00011 707 SUPERFAMILY L domain-like 483 691 - -
Stsc30219g00011 707 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 147 IPR035897 -
Stsc30219g00011 707 ProSiteProfiles TIR domain profile. 7 171 IPR000157 GO:0007165
Stsc30219g00011 707 Gene3D - 174 337 IPR027417 -
Stsc30219g00011 707 Gene3D - 341 428 IPR042197 -
Stsc30219g00011 707 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 688 IPR044974 GO:0006952
Stsc30219g00011 707 Gene3D - 6 173 IPR035897 -
Stsc30219g00011 707 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 173 - -
Stsc30219g00011 707 PRINTS Disease resistance protein signature 646 662 - -
Stsc30219g00011 707 PRINTS Disease resistance protein signature 379 393 - -
Stsc30219g00011 707 PRINTS Disease resistance protein signature 282 296 - -
Stsc30219g00011 707 PRINTS Disease resistance protein signature 205 220 - -
Stsc30219g00011 707 Pfam TIR domain 9 178 IPR000157 GO:0007165
Stsc30219g00011 707 SMART till_3 8 145 IPR000157 GO:0007165
Stsc30219g00011 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 438 IPR027417 -
Stsc30219g00011 707 Gene3D Ribonuclease Inhibitor 528 704 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00011 Stsc-Chr30219 48675 51738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00011 4 686 WRKY Transcription Factor Family AT4G12020 31.133 2.47e-93 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00011 - - aip:107613764 877.085