Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00010 ATGCATCCCATAGTTAAGTATGATGTGTTCGTCAGCTTCAGCGGCAGGGACACTCGCCATGGTTTTCTCAGCCATCTGTTTAAGGCTTTAAAGAACAAGCAAATTGAGACATATGTGGATGACAGGCTCAGAGAAGGAACTGAGATATCACACTCACTCCTTACAGCCATTAAACAATCACAGATTGCTTTGATCATATTCTCCCACAACTATGCTTATTCCAAATGGTGCTTGGATGAACTAGTTAAAATAATGGAATGCAGCAAAGAAAATGGACAAATTGTCATACCTATTTTCCACAATGTAGATCCATCGTGGGTGCGCCACCAAAAGGGAAGTTATCAGGATGCACTTGCCAAACATAAAACATGGAATGAAGCTGAACTTATTGATGAAATTGTAAAGCGTATCTTAGAGAAGTTAAACCAACCATGCAATGGTGATTTACAAGGTCTTGTTGGAACACATGAACCAATTTTAGATATAGAATCATTACTTCATAGCAGGTCAGAAGATGTTGTTATTATTGGACTTTGGGGCATGGGAGGTGTTGGTAAGACAACTCTTGCTACTGCAGTTTTCAATAGATTGTACCCTGAATTTGAAGGACATTTCTTTTTGGGAAATGTAAGGAAAGAAATTGAGAGGCGTGATTTTGCCAGAAAAAAGGTTCTTCTTGTTCTTGACGACGTCTGGGATTCTGATCAATTGAAAGCTTTATGTGGAGGGCATACATGGTTTGGGCCAACTAGTAGAATCATCGTGACAACAAGAGATAAGCATGTCCTTCTTAAGGAAGCCGATCATATACACAAGGTTAAGGAATTGAATTATGATGAATCTCTTCAGCTTTTTAAGTTGATTGCTTTTGAATCAAACTGCACTGTTGAAAAAAAACAAGTTGAGCTGTCGAAGAAGGTGGTTAAATATTGCAAAGGCATTCCATTAGCATTACATGTCTTGGGTTCCTTGCTCTATGGAAAAAGCCAAGAAGACTGGGAAAGTCAACTGGCCAAACTTGAAAGAATGGCTGAACCAAAAATTCAGGTTATACTGAAGTTGAGTTATGATGAATTAGATCATCATGATCAAGATATCTTCTTGTATCTTGCATGTTTCTTCAATACAACTACAGAAGAGCAGATAAAATATCTGCTGGATTCTTGTGGATACTCAACAGCTATTGGGTTAAAAAATCTTAAAAACAAAGCTCTTGTTTGCATCTCAGCAAATAGTTGTGTGTCAATGCATGACTTAATTCGAGAAATGGGCCGTGAAATTGTTCGTGAAGAATCTCCAGCTCATTCAGAAAATCGCAGTAGACTATGGGATCCTACCGATATCCAGATTGTATTGAAAAATAACAATGGAACTGAAACCATTGAAAGTATGACATTGAACATGTCAGAAATTGAGGAATTAAGATTGCATCCCAAGACATTTGCAAGAATGCAGAGGCTCAAGTTTTTGAGATTTCATTCGTGTGATTGCAAAAGTAAGTTGCATGCTCCCGGTGGTAGTAAATCATCTTCGAAAGTGATCAGATTTTTTCATTGGGATTCCTCTCGTTCATGTGATTCCAAGCGTAAGTTGCGTGCTCCTGAAGGTATTAAATCATTTTCAAAAGAAATAAGGTTTTTCCAATGGGATTGCTACCCTTTGAAAACTTTCCCATTTTGTGTTGAAAACCTTGTTGAACTCATACTGCCGCATAGTCAGTTGGAAAAGCTTTGGAAAGGTGCCCAGAATCTTGTAAATCTAAGGAAAGTGGATCTTAATGGTTCATCACGCCTAATCAAGCTCCCAGATTTCTCCAAAGCTTCAAATCTTAGAGAAGTAAATCTTTCTGGCTGCAAAAGTCTGCGTCAAGTTCCTTCATCTATTGTGTCTTCCCACAAGCTTGTTCGACTTTCTCTAAATGGTTGTAAAGAACTCAGAAGTTTTTCTCATAACTCTCGTCTGCCATCTTTGGAAACTCTCTCTCTCAATGGATGTACAGGTCTTGTAGAGTTCTCCTTGACGAGAAATGAAAGCCCATCTTCCTTGATTCCGCAAACACTGCTGCAGCTATGTTTGGATGGCTGCTCCAGTCTTTCTCTGTTGCCAAACAATATCAACATACTCTCATCATTGACAGAGTTGTCACTGTGTCAGACCAACATAAGAAGTTTGCCTGAAAGCATCAAACATATGTCACAATTGAAATGCCTTAACTTGAGCAATTGTAAGAGGCTTCAGTCTCTACCAGAGCTTCCATCATCCATTGAAAGCTTAATTCTCCGTGGCTACGACTCATTAGAGATTGTATCTACTTCTGATTCATCTTTTGTCTCCTCCCATAAGCTATCTCTACTCTCTTTTGATGGTTGCAAAAATCTTAAAAGCTTCTGCCACAACATTGATCTGCCATCTCTGGAGACACTCTCACTCATTGACTGCACTAGTCTCATGGATTTCTCATTGATGAAAAAGGATAGTCCATCTTGTTCGGTACAGCATGACAGTGACACATCATCAATTCTGCCAGCACCTCTAAAACTAAGTCTGAATGGTTGCACCAATCTTTGTCTGTTGCCAAACAATTTAAACATGCTTTCATCACTGACAGAGTTGACACTCTGTCAGACCAACATAACAAGTCTGCCTGAAAGCATGAGGCATCTGTCACAATTGAAATGCCTCAATTTGAGCAATTGTGAGAGTCTTCAGTTTATACCAGAGCTTCCATCATCCATTGAAAACTTAATTCTTATTGGCTGCTACTCATTAGATACTGTATCTGCTTCTGTGTCTACTTTATCTTCCTACAAGCTGGCTCAACTCTCTCTAGATGGTTGTAAGAGTCTTCGAAGCTTCCTGCACAACATTGACCAGTCTTGTTTGACAAAGCATGACAGTGACACATCATCAATTCTGCCAACACATCTAATGCCAAGTTTGGATGGTTGCTCCAATCTTTCTCTGCTGCCAAACAATTTAAACATACTTTCATCATTGACAGAGTTGTCACTTTGTGGGACCAACATAGCAACTTTGCCTGAAAGCATGAAGCATCTGTCACAATTGAAATACCTCAATTTGAGCAATTGTGGGAGGCTTCAGTTTATACCAGAGCTTCCTCCATCCATTGAAAACTTAATTCTTAGTGGCTGCTACTTATTAGAGATTGTATCTTCCGTTTCATCTATTGTATCTTCCCACAATCTGGCCCAGCTCTCTTTAGATGGTTGTAAGAATCTTAGAAGCTTCATGCATAATATTCATCTTCCATCTCTGAGGATATTATCCCTTAGAGGATGCACAAGTCTCATGGAGTTCTCTACAAAATGTGAAAGCCCTTCTCTGCTGCACAATATAGACTTGTTTTCCTCATTAACGGACTTGTGTCTATGTCAAACTGACATAACAAGCTTGCCAGAAAGCATTAAATATCTGTTACAACTTAAATCCCTTGACTTGAGTGAGTGTTTGAAGCTTCAGTTTCTACCAGAGCTTCCGTCATCCATTGTGAAGGTAATTGCTCGTGACTGCTTCGAATTGCATACTGTATCTGTATCTGTATTTGCTTCATATTCAGTGGCTGAACTTGAACAAATCAAAGAGGAACCTCAGGATATAATCTTCAATTTCACCAACTGCATGAAATTGCAAGGGAATGCAATCAACAGCATTGTGGAACATGCCTATGGAAGACTAAAGCGAGCACTAGCAGCAGCACATACATATCTTACAACAGCAAGGCAGGAGGACGATAACAAGGACTTGATTTGCTTCTATCAACAAATTCATCCTAAGTTTGAAGTCTTCTTATCGGAATCTGAGGCTCCAGGATGGTTCAGATATAGAGAGCCACAAAGCATCCCCATTAGCATTGATATCGTCCCAGGTGATAGCTTGTTGGGTTTCATCTTTTGGGTCTCTTTTCCAGGAGACATGGACCACCATGTGTCAGCTGATTCAGTGTCATATGAGTATTGTGTTGAAGCGAGTAATGGCAAAAGTTTCAGGTATACCAGTGATTGGAGCCCAGGAGAGACAATAAAATGGTATGGCGCTGAGTATTTCTTATATGACGGGCAATGCAGCATTGACATGATGGAGATGGTGGAAGAAAACAAAACGAGTAATAATGGCATTCAAGTCAAGGTTTCATTCCTGTTCTTCATTAGTCGTCTTATTATGGGCTATTTTTATGAGGAAGATGATGGCAAAAAGTTAGAACGTTGGGGTGTACACCCAATATATGCCTCAGATGTTTGCATCTGA 4266 0.395 MHPIVKYDVFVSFSGRDTRHGFLSHLFKALKNKQIETYVDDRLREGTEISHSLLTAIKQSQIALIIFSHNYAYSKWCLDELVKIMECSKENGQIVIPIFHNVDPSWVRHQKGSYQDALAKHKTWNEAELIDEIVKRILEKLNQPCNGDLQGLVGTHEPILDIESLLHSRSEDVVIIGLWGMGGVGKTTLATAVFNRLYPEFEGHFFLGNVRKEIERRDFARKKVLLVLDDVWDSDQLKALCGGHTWFGPTSRIIVTTRDKHVLLKEADHIHKVKELNYDESLQLFKLIAFESNCTVEKKQVELSKKVVKYCKGIPLALHVLGSLLYGKSQEDWESQLAKLERMAEPKIQVILKLSYDELDHHDQDIFLYLACFFNTTTEEQIKYLLDSCGYSTAIGLKNLKNKALVCISANSCVSMHDLIREMGREIVREESPAHSENRSRLWDPTDIQIVLKNNNGTETIESMTLNMSEIEELRLHPKTFARMQRLKFLRFHSCDCKSKLHAPGGSKSSSKVIRFFHWDSSRSCDSKRKLRAPEGIKSFSKEIRFFQWDCYPLKTFPFCVENLVELILPHSQLEKLWKGAQNLVNLRKVDLNGSSRLIKLPDFSKASNLREVNLSGCKSLRQVPSSIVSSHKLVRLSLNGCKELRSFSHNSRLPSLETLSLNGCTGLVEFSLTRNESPSSLIPQTLLQLCLDGCSSLSLLPNNINILSSLTELSLCQTNIRSLPESIKHMSQLKCLNLSNCKRLQSLPELPSSIESLILRGYDSLEIVSTSDSSFVSSHKLSLLSFDGCKNLKSFCHNIDLPSLETLSLIDCTSLMDFSLMKKDSPSCSVQHDSDTSSILPAPLKLSLNGCTNLCLLPNNLNMLSSLTELTLCQTNITSLPESMRHLSQLKCLNLSNCESLQFIPELPSSIENLILIGCYSLDTVSASVSTLSSYKLAQLSLDGCKSLRSFLHNIDQSCLTKHDSDTSSILPTHLMPSLDGCSNLSLLPNNLNILSSLTELSLCGTNIATLPESMKHLSQLKYLNLSNCGRLQFIPELPPSIENLILSGCYLLEIVSSVSSIVSSHNLAQLSLDGCKNLRSFMHNIHLPSLRILSLRGCTSLMEFSTKCESPSLLHNIDLFSSLTDLCLCQTDITSLPESIKYLLQLKSLDLSECLKLQFLPELPSSIVKVIARDCFELHTVSVSVFASYSVAELEQIKEEPQDIIFNFTNCMKLQGNAINSIVEHAYGRLKRALAAAHTYLTTARQEDDNKDLICFYQQIHPKFEVFLSESEAPGWFRYREPQSIPISIDIVPGDSLLGFIFWVSFPGDMDHHVSADSVSYEYCVEASNGKSFRYTSDWSPGETIKWYGAEYFLYDGQCSIDMMEMVEENKTSNNGIQVKVSFLFFISRLIMGYFYEEDDGKKLERWGVHPIYASDVCI 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00010 1421 PRINTS Disease resistance protein signature 175 190 - -
Stsc30219g00010 1421 PRINTS Disease resistance protein signature 311 325 - -
Stsc30219g00010 1421 PRINTS Disease resistance protein signature 886 902 - -
Stsc30219g00010 1421 ProSiteProfiles TIR domain profile. 5 141 IPR000157 GO:0007165
Stsc30219g00010 1421 SMART till_3 6 140 IPR000157 GO:0007165
Stsc30219g00010 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 370 IPR027417 -
Stsc30219g00010 1421 Gene3D - 208 273 IPR027417 -
Stsc30219g00010 1421 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 671 IPR044974 GO:0006952
Stsc30219g00010 1421 SMART LRR_typ_2 865 888 IPR003591 -
Stsc30219g00010 1421 SMART LRR_typ_2 996 1018 IPR003591 -
Stsc30219g00010 1421 SMART LRR_typ_2 708 730 IPR003591 -
Stsc30219g00010 1421 SUPERFAMILY "Winged helix" DNA-binding domain 347 453 IPR036390 -
Stsc30219g00010 1421 SUPERFAMILY L domain-like 845 1181 - -
Stsc30219g00010 1421 SUPERFAMILY L domain-like 477 820 - -
Stsc30219g00010 1421 Gene3D - 275 360 IPR042197 -
Stsc30219g00010 1421 Gene3D Ribonuclease Inhibitor 839 972 IPR032675 -
Stsc30219g00010 1421 Gene3D Ribonuclease Inhibitor 652 836 IPR032675 -
Stsc30219g00010 1421 Pfam Leucine Rich Repeat 563 582 IPR011713 -
Stsc30219g00010 1421 Gene3D Ribonuclease Inhibitor 973 1233 IPR032675 -
Stsc30219g00010 1421 Gene3D Ribonuclease Inhibitor 436 650 IPR032675 -
Stsc30219g00010 1421 Pfam NB-ARC domain 163 205 IPR002182 GO:0043531
Stsc30219g00010 1421 Pfam NB-ARC domain 219 359 IPR002182 GO:0043531
Stsc30219g00010 1421 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 135 IPR035897 -
Stsc30219g00010 1421 Gene3D - 4 147 IPR035897 -
Stsc30219g00010 1421 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 135 - -
Stsc30219g00010 1421 Pfam TIR domain 6 125 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00010 Stsc-Chr30219 42868 48062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00010 698 907 WRKY Transcription Factor Family AT4G12020 28.507 2.10e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00010 - - aip:107613764 844.343