Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00009 ATGTCTAGCACTAACAAAACTGGTCAAGTCATTAAGTGCAGAGCTGCGGTTGCATGGGAAGAAGGGAAGCCACTGGTCATAGAAGAAGTAGAGGTAGCACCACCAGAAGCAGGTGAAGTTCGGTTGAAGATCCTCTACACTAGTCTTTGCCATTCTGATCTTTACTTCTGGAAGAGCAGGGGGGATGGGAATTTGTTGTTTCCCCGCATACTCGGCCACGAAGCTGCAGGGATTGTGGAGAGCATAGGGGAGGGTGTGACAAATCTGAAGCCAGGAGACCATGTGCTACCTGTGTTCACCGGAGAGTGTGGCGAATGCCGGAGCTGCAAGTCTGAAGAGAGCAACCTCTGTGATGTCCTCAGGCTCAACACTGATTCCGGTGTCATGCTCAGTGATGGAAAATCAAGATTCTCCAAAGATGGAAAACCCATTTACCACTTCCTTGGAACTTCAACATTCAGTGAATACACTGTTTCACATGCTAAGTGTGTTATCAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGTGGAATCTGCACAGGACTTGGTGCAACTTTAAATGTGGCAAAACCAAAGCCTGGTTCTACTGTTGCTGTCTTTGGATTGGGAGCAGTTGGTCTTGCCGCTGCTGAAGGGGCAAGGCTTTCTGGTGCATCAAGAATCATTGGAGTTGATATACTTTCCAGCAGACAAGAACAAGCCAAAAAATTTGGAATCACTGACTTTGTGAACCCAAAAGATCATGACAAACCTGTGCAACAGGTGCTTGTTGAAAGGACGGATGGAGGTGTTGATCGCGCTCTTGAATGCACTGGAAAAGTAGAAGCCGCGATTGCAGCATTTGAATCTGTTCATGATGGTTGGGGTGTTGCTGTGCTTGTAGGTCTGCCTGGCAATGAAGATGAATTCAAGACTAAAACCATGAACTTCTTGTATGAGAGGACTGTTAAGGGTACCTTCTATGGGAATTACAAACCACTCTCTGATATTCCCTCTGTTGTGGAGAAGTACATGAACAAAGAGCTAGAGTTGGAGAAATTCATCACTCACTCAGTCCCATTTTCTGAGATCAATAAATCATTTGATTTAATGTTGAAAGGAGAGTCAATTAGGTGCCTCATCTGCATGGAAAGCTGA 1152 0.4549 MSSTNKTGQVIKCRAAVAWEEGKPLVIEEVEVAPPEAGEVRLKILYTSLCHSDLYFWKSRGDGNLLFPRILGHEAAGIVESIGEGVTNLKPGDHVLPVFTGECGECRSCKSEESNLCDVLRLNTDSGVMLSDGKSRFSKDGKPIYHFLGTSTFSEYTVSHAKCVIKINPAAPLDKVCVLSCGICTGLGATLNVAKPKPGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDILSSRQEQAKKFGITDFVNPKDHDKPVQQVLVERTDGGVDRALECTGKVEAAIAAFESVHDGWGVAVLVGLPGNEDEFKTKTMNFLYERTVKGTFYGNYKPLSDIPSVVEKYMNKELELEKFITHSVPFSEINKSFDLMLKGESIRCLICMES 383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00009 383 CDD alcohol_DH_plants 11 379 - -
Stsc30219g00009 383 Gene3D - 186 324 - -
Stsc30219g00009 383 Pfam Zinc-binding dehydrogenase 209 329 IPR013149 -
Stsc30219g00009 383 Pfam Alcohol dehydrogenase GroES-like domain 38 167 IPR013154 -
Stsc30219g00009 383 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Stsc30219g00009 383 Gene3D - 22 373 - -
Stsc30219g00009 383 SUPERFAMILY GroES-like 7 189 IPR011032 -
Stsc30219g00009 383 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 172 345 IPR036291 -
Stsc30219g00009 383 FunFam Alcohol dehydrogenase class-P 186 324 - -
Stsc30219g00009 383 SUPERFAMILY GroES-like 332 379 IPR011032 -
Stsc30219g00009 383 PANTHER ALCOHOL DEHYDROGENASE 8 379 - -
Stsc30219g00009 383 FunFam alcohol dehydrogenase 1-like isoform X1 21 185 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc30219g00009 Stsc-Chr30219 39023 41617 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00009 39 373 Monolignol Biosynthesis Gene Families AT1G72680 26.176 4.55e-17 80.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00009 K18857 - ming:122088951 598.586