Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00008 ATGGAAGGAGGAGGTCGAACGGTGGAAGAGATTTACGACGATTTCAAGGGCCGAAGAGCTGCCATCATCAAAGCCCTTACAACCGATGTTCAGGATTTCTACAACCAATGCGATCCTGAGAAGGAAAATCTATGCTTATATGGATTACCTAGTGGGCAGTGGGAGGTAAACTTACCTGTTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAGGATTGGTTATCTTTAGTTGCAGTCCATAGCGATACATGGCTTGTTTCTCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGACAGAGCTGACAGGAAACGACTATTTAATCTGATCAATGAACTACCGACAATATTTGAAGTTGTTACGGGTGCAGCAAAGAAACAAGCTAAAGAGAAGTCCTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGCTCCAAAGCGCGCGCTTCTGAGTCACAGGGTAGACAGTCAAAGGCATTCCAACCAAAGGACGAGGATGAAGGAGCAGAAGATCAAGACGATGAGGAACATGGAGAAGCCTTTTGTGGGGCATGCGGCGAGAGTACCGGCACCGATGAGTTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCACGGTAAATGTGTGAAGATTACCCCTGCTAGGGCAGAGCATATGAAGCAATACAAGTGTCCATCATGCAGCGGTAACAAGAGAGCTCGCTGA 750 0.4707 MEGGGRTVEEIYDDFKGRRAAIIKALTTDVQDFYNQCDPEKENLCLYGLPSGQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLVSLAFYFGARFGFDRADRKRLFNLINELPTIFEVVTGAAKKQAKEKSSVSNNSGSKSKSSSKARASESQGRQSKAFQPKDEDEGAEDQDDEEHGEAFCGACGESTGTDEFWICCDICEKWFHGKCVKITPARAEHMKQYKCPSCSGNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00008 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Stsc30219g00008 249 CDD PHD_AL_plant 195 245 IPR044104 -
Stsc30219g00008 249 SMART PHD_3 195 243 IPR001965 -
Stsc30219g00008 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Stsc30219g00008 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Stsc30219g00008 249 MobiDBLite consensus disorder prediction 141 171 - -
Stsc30219g00008 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Stsc30219g00008 249 FunFam PHD finger alfin-like protein 188 244 - -
Stsc30219g00008 249 Pfam PHD-finger 195 243 IPR019787 -
Stsc30219g00008 249 PANTHER CPG BINDING PROTEIN 6 248 IPR045104 GO:0006355|GO:0042393
Stsc30219g00008 249 MobiDBLite consensus disorder prediction 141 189 - -
Stsc30219g00008 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00008 Stsc-Chr30219 31438 34880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00008 1 249 Alfin-like Transcription Factor Family AT3G42790 72.441 7.66e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc30219g00008 Alfin 9.7e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00008 K26274 - gmx:100170700 389.423