Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30219g00007 ATGAAGTGCCTATGTGAAAAAGATGCTGCTCTATGTTCTGTTCATTCAACACCAGCCTATGTTCTTGGATGCTCATCATCATGGGGGAATTCTTCTGAGTCTGATGTTGTCCAACACTCATCACTGAGCTTAAACATGGGTGTTGTTCTGCCACAAGAATGTCACAAGAGTAAGCCACCAAGTTTCCAATTTCAAGAGCAGGATTCATCTTCAACTCTTTCCACCAATCAATCTGGTAGCAGAAATGTGGAGAGAAGTGCTGGAAATCAAATCAGTTCTTCTATGGGGACTCTTGATTTTAACTTCCCTACTTCGGAACTCGACCGCAGCCAATCAACTACTCCAATTGCACTCCATTATGCATATCCATACTATGGTGGCATACTAGCTGCTGCATATGGCCAACATTCTAAGGTAATTGGAAGTGCACCAGTTAGGATTCCACTGCCACTTGATCTAAGAGAAGAACCAATATATGTGAATTCAAAGCAGTATCATGCTATTCTGAGGCGTAGACAGTACCGAGCTAAACTTGAAGCACATAACAAACTCATCAAAGATAGGAAACCATATCTTCACGAATCTCGCCATCTACATGCATTAAAGAGAGCTAGAGGTGCTGGTGGGCGCTTTCTCAATACTAAGAATCATGATGAAGAATCAAAGACTGCTTCAGCAAACATGCCACACTCCAAAATGCATGAGGTAGAAAACTACTTAGATGCTAATTCTACCACCACCACCACCACCACCAGCAGCTACCATGCTTACATTGGAAGGGATATCCTGGACTATACGGCGAATAAGGGCGGCCGCGGCAATCACCGGAGTGTGTCTGTTCTCATGTGA 849 0.4358 MKCLCEKDAALCSVHSTPAYVLGCSSSWGNSSESDVVQHSSLSLNMGVVLPQECHKSKPPSFQFQEQDSSSTLSTNQSGSRNVERSAGNQISSSMGTLDFNFPTSELDRSQSTTPIALHYAYPYYGGILAAAYGQHSKVIGSAPVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGAGGRFLNTKNHDEESKTASANMPHSKMHEVENYLDANSTTTTTTTSSYHAYIGRDILDYTANKGGRGNHRSVSVLM 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30219g00007 282 ProSitePatterns NF-YA/HAP2 subunit signature. 159 179 IPR018362 GO:0003677|GO:0016602
Stsc30219g00007 282 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 156 211 IPR001289 GO:0003700|GO:0006355
Stsc30219g00007 282 SMART cbf3 153 214 IPR001289 GO:0003700|GO:0006355
Stsc30219g00007 282 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 54 251 IPR001289 GO:0003700|GO:0006355
Stsc30219g00007 282 Gene3D - 154 216 - -
Stsc30219g00007 282 PRINTS CCAAT-binding transcription factor subunit B signature 157 179 IPR001289 GO:0003700|GO:0006355
Stsc30219g00007 282 PRINTS CCAAT-binding transcription factor subunit B signature 188 211 IPR001289 GO:0003700|GO:0006355
Stsc30219g00007 282 MobiDBLite consensus disorder prediction 55 95 - -
Stsc30219g00007 282 MobiDBLite consensus disorder prediction 58 95 - -
Stsc30219g00007 282 ProSiteProfiles NF-YA/HAP2 family profile. 154 214 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30219g00007 Stsc-Chr30219 26379 28963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30219g00007 15 248 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.852 1.06e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc30219g00007 CBFB_NFYA 5.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30219g00007 K08064 - gmx:100803893 263.077