Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30218g00005 ATGTTGAATAAACCACTCAAACTCTCGGCCTTAACCTATTTCATCATATTATGGTCATGGTGGACCTCATTTCATTTCCATGGAGCATTAGGAGACCCTCAAACCCTTTTGCTCAACAAAGGTTGCAGCCAATACAACGCAACAAACTTGTCAAATTTCAACCAAAATCTGAACGCAACTTTGGGAGATCTTAGGAACCAAAGTAAGACCACGGATTTTGGGACATCACACCATACCGTAGGAGCGGATCCCGTCTACGGCATGTTTCAATGCAGGGACTACTTATCAAAGGCCGATTGTGCCACGTGTGTCTCGGTGGCTGCCGCCCAAATTCGCAATTGCTCCGCCGGAGCTAATGGTGCCCGGGTGATATATGATGGTTGTTTCATCAGGTACGAAAGCAATGGATTTTACAACCAAACAACTCTACCGGGTAACAGCATGATTTGTGGTAACAAAACTGCAAGTGGAGGATCAAATGCTTTCAATGGAGTTGCACAAAAAGTGCTACAAGATTTGCAAACAGCAACACCAAGAATTCCCGGTTATTTTGCAGCTACCAAGACACAATTAGCCGCCGGCGGCGCAATCTACGCCATCGCTCAATGTGCTCAAACTGTGTCTGAGGGTGGTTGTTCGGAATGCTTGAATGTTGGTGTATCCAACATTCAAAGTTGTCTTCCTAATACTGATGGTAGAGCTTATGATGCTGGTTGTTTTATGAGATATTCTGTTACACCATTCTTTGCTGATAACCAAGCTGTTGATATCACACCATATTTGAAACAACAAGGAGGAGGAAATTCAAGCCACAAAGGGGCTATTATTGGGGGTGTTGTTGGAGGAGCAGTGCTTCTTATTATTCTCTTTGCATTGTTTGTGTGGCTTAGAAGAGACAATAAATCACCAAAGAGAGGTCCTAGAGGTGACATATTGGGAGCAACTGAGCTGAAAGGTCCAGTTACTTATAGGTACAAAGATTTAAAAACCGCAACTAAAAATTTTAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATATAAGGGTACTCTGAAAAATGGAAAAATAGTTGCAGTGAAGAAATTGGCTTTAAGAGAATCAAGAAAAATTGATGAAAGTTTTGAAAGTGAAGTAAAGCTTATAAGCAATGTCCACCATAGGAATCTGGTTAGACTTCTTGGATGCTGTAGTAAAGGCCCAGAAAGAATACTTGTTTATGAGTACATGCCAAATAGCAGCCTTGATAAATACTTATTTGGTGAGAGAAGGGATAATCTGAATTGGAAACAAAGGTATGATATAATTCTAGGCACAGCAAGAGGTCTTGCATATCTACATGAGGATTTCCATGTTTGTATCATACATAGAGATATTAAAACTAGCAACATACTCTTGGATGATGATCTTCAACCTAGAATTGCTGATTTTGGTTTAGCAAAGCTTCTACCCGAGGACAAATCTCACCTTAGCACAAAATTTGCAGGAACATTGGGATATACAGCACCTGAATATGCCATTCATGGCCAATTATCAGAAAAAGCTGATGTCTATAGTTTTGGCGTTGTTATACTCGAAATTATAAGTGGTCAAAAAAGCAGTGAAGTGAGGGATGATGTTAATGGTGAATTCCTTCTTCAAAGGGCATGGAAACTGTACGAGAAAGACATGCACCTGTTGTTAGCAGACCCAACATTGGATCCTGAAGAGTATAGTTCAGAAGAAGTAAAGAGAATCATAGAAATTGCTTTGTTATGCACTCAAGGATCAGCTTCCACAAGACCAACAGTGTCCGAGGTGGTGCTGTTACTCAAAAGTAAGAACTTATTGATGGAGAATATGATGAGGCCTACAATGCCTGTCTTTGTTCAATCTGATAATGTTAGAACTTCTCAACCTGGCACTTCTACCTCAACTGCTTCATCTGCTTCTGCGTCTAAAGCTACTGTTTCCACTTCAGTACTATCAGCTCGTTGA 1983 0.4054 MLNKPLKLSALTYFIILWSWWTSFHFHGALGDPQTLLLNKGCSQYNATNLSNFNQNLNATLGDLRNQSKTTDFGTSHHTVGADPVYGMFQCRDYLSKADCATCVSVAAAQIRNCSAGANGARVIYDGCFIRYESNGFYNQTTLPGNSMICGNKTASGGSNAFNGVAQKVLQDLQTATPRIPGYFAATKTQLAAGGAIYAIAQCAQTVSEGGCSECLNVGVSNIQSCLPNTDGRAYDAGCFMRYSVTPFFADNQAVDITPYLKQQGGGNSSHKGAIIGGVVGGAVLLIILFALFVWLRRDNKSPKRGPRGDILGATELKGPVTYRYKDLKTATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLALRESRKIDESFESEVKLISNVHHRNLVRLLGCCSKGPERILVYEYMPNSSLDKYLFGERRDNLNWKQRYDIILGTARGLAYLHEDFHVCIIHRDIKTSNILLDDDLQPRIADFGLAKLLPEDKSHLSTKFAGTLGYTAPEYAIHGQLSEKADVYSFGVVILEIISGQKSSEVRDDVNGEFLLQRAWKLYEKDMHLLLADPTLDPEEYSSEEVKRIIEIALLCTQGSASTRPTVSEVVLLLKSKNLLMENMMRPTMPVFVQSDNVRTSQPGTSTSTASSASASKATVSTSVLSAR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30218g00005 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Stsc30218g00005 660 CDD STKc_IRAK 341 607 - -
Stsc30218g00005 660 FunFam Cysteine-rich receptor-like protein kinase 2 299 411 - -
Stsc30218g00005 660 MobiDBLite consensus disorder prediction 629 660 - -
Stsc30218g00005 660 Gene3D Phosphorylase Kinase; domain 1 312 411 - -
Stsc30218g00005 660 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Stsc30218g00005 660 FunFam Cysteine-rich receptor-like protein kinase 2 34 137 - -
Stsc30218g00005 660 Gene3D Transferase(Phosphotransferase) domain 1 412 621 - -
Stsc30218g00005 660 SMART serkin_6 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30218g00005 660 ProSitePatterns Protein kinases ATP-binding region signature. 341 364 IPR017441 GO:0005524
Stsc30218g00005 660 SUPERFAMILY Protein kinase-like (PK-like) 319 635 IPR011009 -
Stsc30218g00005 660 FunFam Cysteine-rich receptor-like protein kinase 2 145 248 - -
Stsc30218g00005 660 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 87 644 - -
Stsc30218g00005 660 FunFam Cysteine-rich receptor-like protein kinase 2 412 614 - -
Stsc30218g00005 660 Gene3D - 146 248 IPR038408 -
Stsc30218g00005 660 Gene3D - 34 137 IPR038408 -
Stsc30218g00005 660 Pfam Salt stress response/antifungal 155 244 IPR002902 -
Stsc30218g00005 660 Pfam Salt stress response/antifungal 42 134 IPR002902 -
Stsc30218g00005 660 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30218g00005 660 ProSiteProfiles Gnk2-homologous domain profile. 35 137 IPR002902 -
Stsc30218g00005 660 Pfam Protein kinase domain 336 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30218g00005 Stsc-Chr30218 28824 34999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30218g00005 5 660 Receptor kinase-like Gene Family AT1G70520 37.387 3.37e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30218g00005 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30218g00005 - - gmx:100813585 949.503