Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30218g00004 ATGTTGCAACTTAATAAGGAAGTATCCATCATAACCCTAATATGGTTGTGGTGGTGGTGGTTGACATGGCATCTTCACGGTGCAGTTGTCGTAGTTGCAGATCCTCAAACGGTTCTAATAAACCAAGGGTGCAGCACATACAACGAAACCAACTTGAAAAGCTTCTTCGTCAACATCAATGGAACGTTTTCGGAGCTGAGAAGTGATATAACGAATCAGAGCAAGCACTTTGGGACTGCACAGGAAGCAAGGGGAGAGGTTATCACATACACCATGTTTCAGTGTAGAAACTATCTTTCTCAAAAGGATTGTCTTGCTTGCTTCAACAACGCCACCGTCCAAATTCGGAATTGTTCCGACGGCAATGGTGCCAGAGTCATCTATGATGGTTGCTTCCTCAGGTATGAGAGCAATATCTTCTTCAGCCAAACAACTGAACCTGGCAATGGTGTAAAATGTGGAAACAAAACAGCCAAAGGAGGCAATGTTTTTGGTTCCGCTGGACAACAAGCTCTAATGAATCTCCAAACAGCAACACCAAAAATCAAAGGATTTTATGCTGCCACAAAGACACAATTGCCAAATAATGTTGGTGCAATCTATGCTGTTGCACAATGTGTTGAAACTGCCACTGAAAGTGATTGCTTGGCATGCATGAATGTTGGATACAACAATTTGCAAACATGCCTTCCTCATTCAGATGGCAGGGCTTATGATGCTGGTTGTTTTATGAGATATTCACAGACTCCTTTCTTTGCTGATAATCAAACCATTGATATCACACCATACTTGAAACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTTGGTGGAGGTGTAGCCCTTGTTGTGATCCTTCTTGCATTATTTGCATGGTATAGACATTCCAAAAAACCCAAAAGGGTTCCTAGAGGGGATATATTGGGAGCAACCGAGTTGAAGGGTCCAGTTAATTACAAGTATAAGGATTTGAAAGTTGCAACAAAAAATTTCAGTAAAGAAAATAAATTAGGAGAAGGAGGATTTGGTAATGTGTACAAGGGTACTCTTAAAAATGGGAAAGTTGTGGCAGTGAAGAAATTGATTCTGGGGCAAATTGAAAAAATGGAAGATCATTTTGAGAGTGAAGTAAAGCTTATTAGTAATGTGCACCATAGGAATCTGGTGAGACTTCTTGGTTGTTGTAGCAAAGGCCCAGAGAGGATCCTTGTTTATGAATACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTAACAAGAAAGGATCCCTGAATTGGAAACAACGTTGTGACATAATTTTAGGGACAGCAAGGGGATTGGCCTATCTTCACGAGGAATTCCATGTTTCTATTATACACAGAGATATAAAGACTGGAAATATTCTCTTGGACGATGATCTTCAACCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTGCCAGGGGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTAGGATATACGGCACCCGAATATGCAATTCATGGTCAATTATCCGAAAAAGCAGATACTTATAGTTATGGTATTGTTGTCCTAGAAATTATAAGTGGTCAAAAGAGCACCGAAATGAAGGTTGACGACAACGGACACGAATACCTTCTTCAACGAGCATGGAAACTGCATGAGCAAGGTATGCACATGGAGTTAGTGGACAAGAGCATAGAGGCTGATGAGTATGAAAGAGAGGAAGTGAAGAAAATAATAGAGATTGCATTGATGTGCACTCAGGCATCAGCTTCAATGAGGCCAACAATGTCTGAAGTAGTTGTGTTGCTGAAAAGCAAAGGGTTGTTTGAGCACATGCAACCTTCAATGCCTGTGTTTGTTGAGTCAAATATGAAAGCCAGAGGAGACATTTCTGCTTCAACAGGTGCTTCCTCTTCTACAACTACTTCCAATGCTACTGTCTCCACTTCTATGGTATCAGGAAGATGA 1977 0.4092 MLQLNKEVSIITLIWLWWWWLTWHLHGAVVVVADPQTVLINQGCSTYNETNLKSFFVNINGTFSELRSDITNQSKHFGTAQEARGEVITYTMFQCRNYLSQKDCLACFNNATVQIRNCSDGNGARVIYDGCFLRYESNIFFSQTTEPGNGVKCGNKTAKGGNVFGSAGQQALMNLQTATPKIKGFYAATKTQLPNNVGAIYAVAQCVETATESDCLACMNVGYNNLQTCLPHSDGRAYDAGCFMRYSQTPFFADNQTIDITPYLKQGGSSKKWAIIGGVGGGVALVVILLALFAWYRHSKKPKRVPRGDILGATELKGPVNYKYKDLKVATKNFSKENKLGEGGFGNVYKGTLKNGKVVAVKKLILGQIEKMEDHFESEVKLISNVHHRNLVRLLGCCSKGPERILVYEYMANSSLDRFLFGNKKGSLNWKQRCDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEMKVDDNGHEYLLQRAWKLHEQGMHMELVDKSIEADEYEREEVKKIIEIALMCTQASASMRPTMSEVVVLLKSKGLFEHMQPSMPVFVESNMKARGDISASTGASSSTTTSNATVSTSMVSGR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30218g00004 658 ProSiteProfiles Protein kinase domain profile. 334 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30218g00004 658 ProSiteProfiles Gnk2-homologous domain profile. 146 251 IPR002902 -
Stsc30218g00004 658 FunFam Cysteine-rich receptor-like protein kinase 2 411 614 - -
Stsc30218g00004 658 Pfam Protein kinase domain 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30218g00004 658 Gene3D Phosphorylase Kinase; domain 1 311 410 - -
Stsc30218g00004 658 Gene3D Transferase(Phosphotransferase) domain 1 411 616 - -
Stsc30218g00004 658 ProSiteProfiles Gnk2-homologous domain profile. 37 140 IPR002902 -
Stsc30218g00004 658 CDD STKc_IRAK 340 607 - -
Stsc30218g00004 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Stsc30218g00004 658 Pfam Salt stress response/antifungal 44 137 IPR002902 -
Stsc30218g00004 658 Pfam Salt stress response/antifungal 157 248 IPR002902 -
Stsc30218g00004 658 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Stsc30218g00004 658 FunFam Cysteine-rich receptor-like protein kinase 2 36 140 - -
Stsc30218g00004 658 FunFam Cysteine-rich receptor-like protein kinase 2 299 410 - -
Stsc30218g00004 658 Gene3D - 150 251 IPR038408 -
Stsc30218g00004 658 Gene3D - 36 140 IPR038408 -
Stsc30218g00004 658 FunFam Cysteine-rich receptor-like protein kinase 2 148 251 - -
Stsc30218g00004 658 MobiDBLite consensus disorder prediction 633 658 - -
Stsc30218g00004 658 SMART serkin_6 334 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30218g00004 658 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 643 - -
Stsc30218g00004 658 SUPERFAMILY Protein kinase-like (PK-like) 322 629 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30218g00004 Stsc-Chr30218 22379 27918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30218g00004 21 658 Receptor kinase-like Gene Family AT1G70520 36.697 2.27e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30218g00004 Pkinase 6.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30218g00004 - - gmx:100801131 910.983