LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30218g00003	ATGTTCCATAATGGAGTTGAGGGAGACCCTCAAATCAATTCACTCAAGAAATATTGCGGAAAGCACGTACCAATAATCGACGACGCGTTGTTCAACTTCAACGATGTTGTATATGCAGCAGTGGAAGACCTTAGAAACCAAAGCATGATGAACAACTACTTTGGCACTTCACATAAGACCATGGGAGCTGGCGCTATTACTGTATATGCCATGTTCCAATGTAGAAGATACCTTTCTAACGCTGATTGCACCGCCTGTTTCGCCGCCGCCAACAGGGATACTTGCACCCAAGTGGATAGTGTCCATATCGTCTACGATGGCTGCTTCCTCAGGTATGAACTATTCAGCTTCTTCAATGATACCGTTAGTGATGTCAATGGTGTTGTTTGTGGAAATCCAAGTTCAAAGGTAGAAACCATTAATGATGATTTTAGTGAAGAAGTAAAAGAAGTGCTGAACAAGCTACAAATAGCAACACCCAGAATCTCTAATTACTTTGCAGCAACAAAGACAGCATTGGTTGGTGGTGGTGCAATCTATGCTGTTGCACAATGTATTGAAACTATTCCCCAACATGGTTGTCATGAATGCCTCAACCTTGGATTCAACAACATACAAGGTTGTCTTCCATACACAGATGCTAGGGAATATGATGCTGGCTGTTTTATTAGATACTCTCAAAGACCATTTTTTGCTGATAACCAAACCATTGATATCACATCCGTCTTAGACAAAGGTGATTCACGCAAGAAATTGTACACTATAATATTTGGTGTTCTTGGAGGTGTAGCTCTTATTATTATAATGTTCTTTGCACTATATCGTTTCTGTGCCAAATTTAGTTTCAAGAAAACCATGAGAGTCCCTAAAGGTGAAATATCAGGAGCAACCAGTAAGTTGGAAGCTCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAGTCAAGAAAATAGACTAGGAGGAGGTGGCTTTGGCAATGTATACAAGGGGACTCTGAAAAACGGTAAAGTTATTGCGGTGAAGAAATTGTTCATAGGCCAATTGAACAAGAAGGATGATGACTTTGAAACTGAAGTGAAGTTTCTAAGTAATGTTCATCACCGAAATCTTGTTAGACTCCTTGGATTTTCCAATAAAGGCCGAGACAGAGTGATTGTTTATGAATATATGATAAATGGGAGTCTTGATAAATTCTTATTTGGTAAGAAAAAAGGTTGCCTGAATTGGAAGCAACGTTATGATATAGCTTTGGGCACAGCAAGGGGATTGGCCTATCTACATGAAGATTTTCCTGTTTTAATCATACATAGAGATATCAAAAGTAGCAATATTCTCTTGGATGATAAACTTCAACCCAAAATAGCTGATTTTGGCTTGGCAAGATTTCTAGCCAGTGACCAATCCAAACTCAAAACAAATTTTGCAGGAACATTGGGATATACAGCACCTGAATATGCAATTCACGGTCAATTATCACAAAAAGTTGATACATATAGTTATAGTATTGTAGTTCTTGAAATTGCATGGGAACTTTATGAACAAGGCAGTCACATGGAATTAGTGGATAAGAATTTAGAGCCTAATGAGTATGATTTGGAAGAAGTTAAGAGAGTTATAGAGATTGGTTTAATGTGCACTCAAGCATCAGCAGCAAAGAGGCCAAAAATGTCTGAAGTAGTAGTCTTACTCTCAAGTAATAAGGCCCAACTTGAGCGTTTGCAACCTTCAATCCCTATATTTGTTGACTCAAAAAACTTGATGAAACCACAAGGAAGCATTCTTTTCTCAAATGCAACTGTCTCTAATTCTGTTATATCAGCTAGATGA	1842	0.3789	MFHNGVEGDPQINSLKKYCGKHVPIIDDALFNFNDVVYAAVEDLRNQSMMNNYFGTSHKTMGAGAITVYAMFQCRRYLSNADCTACFAAANRDTCTQVDSVHIVYDGCFLRYELFSFFNDTVSDVNGVVCGNPSSKVETINDDFSEEVKEVLNKLQIATPRISNYFAATKTALVGGGAIYAVAQCIETIPQHGCHECLNLGFNNIQGCLPYTDAREYDAGCFIRYSQRPFFADNQTIDITSVLDKGDSRKKLYTIIFGVLGGVALIIIMFFALYRFCAKFSFKKTMRVPKGEISGATSKLEAPINYKYNDLKAATNNFSQENRLGGGGFGNVYKGTLKNGKVIAVKKLFIGQLNKKDDDFETEVKFLSNVHHRNLVRLLGFSNKGRDRVIVYEYMINGSLDKFLFGKKKGCLNWKQRYDIALGTARGLAYLHEDFPVLIIHRDIKSSNILLDDKLQPKIADFGLARFLASDQSKLKTNFAGTLGYTAPEYAIHGQLSQKVDTYSYSIVVLEIAWELYEQGSHMELVDKNLEPNEYDLEEVKRVIEIGLMCTQASAAKRPKMSEVVVLLSSNKAQLERLQPSIPIFVDSKNLMKPQGSILFSNATVSNSVISAR	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30218g00003	613	Pfam	Protein tyrosine and serine/threonine kinase	320	566	IPR001245	GO:0004672\|GO:0006468
	Stsc30218g00003	613	ProSiteProfiles	Gnk2-homologous domain profile.	124	230	IPR002902	-
	Stsc30218g00003	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	439	451	IPR008271	GO:0004672\|GO:0006468
	Stsc30218g00003	613	Gene3D	-	128	230	IPR038408	-
	Stsc30218g00003	613	Gene3D	-	26	117	IPR038408	-
	Stsc30218g00003	613	Pfam	Salt stress response/antifungal	130	227	IPR002902	-
	Stsc30218g00003	613	Pfam	Salt stress response/antifungal	33	113	IPR002902	-
	Stsc30218g00003	613	CDD	STKc_IRAK	324	565	-	-
	Stsc30218g00003	613	ProSiteProfiles	Gnk2-homologous domain profile.	13	117	IPR002902	-
	Stsc30218g00003	613	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	69	593	-	-
	Stsc30218g00003	613	FunFam	Cysteine-rich receptor-like protein kinase 2	284	394	-	-
	Stsc30218g00003	613	Gene3D	Transferase(Phosphotransferase) domain 1	395	582	-	-
	Stsc30218g00003	613	FunFam	Cysteine-rich receptor-like protein kinase 2	125	230	-	-
	Stsc30218g00003	613	ProSiteProfiles	Protein kinase domain profile.	318	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30218g00003	613	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	395	521	-	-
	Stsc30218g00003	613	SUPERFAMILY	Protein kinase-like (PK-like)	299	578	IPR011009	-
	Stsc30218g00003	613	Gene3D	Phosphorylase Kinase; domain 1	280	394	-	-
	Stsc30218g00003	613	ProSitePatterns	Protein kinases ATP-binding region signature.	324	347	IPR017441	GO:0005524
	Stsc30218g00003	613	SMART	serkin_6	318	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30218g00003	Stsc-Chr30218	11624	18693	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30218g00003	6	613	Receptor kinase-like Gene Family	AT1G70520	36.180	4.65e-112	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc30218g00003		PK_Tyr_Ser-Thr	1.4e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30218g00003	-		-	gmx:100813585	664.84