LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30218g00002	ATGTTCCATGGAGCTCAAGCAGACCCTCAAATCAATTCACTCATCAAAGCTTGCGGAAGGAACAGATCAAGCAGCTTGTTCAACTTTAACAAGATTCTAAATGCAACATTGGAAGACCTCATAAACCAAAGCACAAGAAATGATGACAACTATTTTGGCACTTCAAATAATGTTATGGGAGGTGACAGTGTATATGGCTTGTTCCAATGTAGAAGATATCTTTCTAACACCGATTGCGCTGCATGTGTTGACGCCGCCGTTGCAGACATCCTTACTTGCTCCGGTGCGGTTAGTGCCCATATCGTATATGATGGGTGCTTCCTCAGATATGGACCACACAGCTTCTACTCTGATACCGTTCGTGATGGCAATGGTATTGTTTGCGGAAATCAAACTTATAATAATGAATTTAGCGAAGAAACAAAAGAAGTTCTAAACAAGCTGCAAATAGCAACACCCAGAATCCCTCATCACTATGCAGCAACAAAGACAGCATTGGTTGGTGGTGGTGCAATCTATGCTATTGCACAATGTGTTGAAACTGTTTCACAAAATGGTTGTTATGAATGCCTCAACCGTGGATTCAATAGCATACAAGGTTGCCTTCCCTACACAGATGCTAGGGAATATGATGCTGGTTGTTTCATGAGATACTCTCACCAACCCTTCTTTGCTGATAACCAGACCATTGATATCACACCCTTCTTAGACAAAGGTAATTCACGCAAGAAGTTGTACCTTTTAATATTTGGTGTTTTGGGAGGTGTAGCTCTTGTTACTGTGATCTTCTTTGCATTATATCATTTATATTCCAAACATGGTTTCAAGAAAACCATGAGGGTCCCTAAAGGTGAAATATCAGGAGCAACAAAGTTGAAAGCTCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAGTGAAGAAAATAGACTAGGAGGGGGTGGCTTTGGCAATGTATACAAGGGAACTTTGAAAAACGGTAAAGTTATTGCGGTGAAAAAATTGTTCATAGGCCAATTGAACAAGAGGGATGATGACTTTGAAACTGAAGTGAAGTTTCTAAGTAATGCTCATCACCGAAATCTTGTTAGACTCCTTGGATTTTCCAATAAAGGCCAAGACAGATTAATTGTTTATGAATACATGACAAATGGCAGTCTTGATAAATTCTTATTTGGTAAGGAAAAAGGTTGCCTAAATTGGAGGCAGCGTTATGATATAGCTTTGGGCACAGCAAGGGGATTGGCATATCTACATGAAGAGTTTCATGTTTCAATCATACATAGAGATATCAAGAGTAGCAACATTCTCTTAGATGATAAACTTCAACCCAAAATAGCTGATTTTGGCTTGGCAAGATTTCTAGCAAGTGACCAATCCAAACTCAAAACAAAATTTGCAGGAACATTGGGTTATACGGCACCTGAATATGCAATTCACGGTCAATTGTCACAAAAAGTCGATACATATAGTTATGGTATTGTAGTTCTAGAAATCGTAAGTGGTCAAAAGAGCACTGAAATAGTGAAGGACAATAATAACAACAGTCATGAATATCTTATTAAGCAAGCATGGGAACTTTATGAGCAAGGCAAGCACATGGAATTAGTGGATAAGAATTTAGAGCCTAATGAGTATGATTTGGAAGAAGCGAAGAGAGTTATAGAGATTGGTTTAATGTGCACTCAAGCATCAGCAGCAAAGAGGCCAAAAATGTCTGAAGTGGTAGTCTTACTCACAAGTAAGGCACAACTTGAGCATTTGCAACCTTCAATCCCTGTGTTTGTTGAGTCAAACTTGAAACCCCAAGGAAGCACTTTTTACTCAGATGCAACTGTGTCTGATTCTATTGTATCAGCTAGATAA	1881	0.3854	MFHGAQADPQINSLIKACGRNRSSSLFNFNKILNATLEDLINQSTRNDDNYFGTSNNVMGGDSVYGLFQCRRYLSNTDCAACVDAAVADILTCSGAVSAHIVYDGCFLRYGPHSFYSDTVRDGNGIVCGNQTYNNEFSEETKEVLNKLQIATPRIPHHYAATKTALVGGGAIYAIAQCVETVSQNGCYECLNRGFNSIQGCLPYTDAREYDAGCFMRYSHQPFFADNQTIDITPFLDKGNSRKKLYLLIFGVLGGVALVTVIFFALYHLYSKHGFKKTMRVPKGEISGATKLKAPINYKYNDLKAATNNFSEENRLGGGGFGNVYKGTLKNGKVIAVKKLFIGQLNKRDDDFETEVKFLSNAHHRNLVRLLGFSNKGQDRLIVYEYMTNGSLDKFLFGKEKGCLNWRQRYDIALGTARGLAYLHEEFHVSIIHRDIKSSNILLDDKLQPKIADFGLARFLASDQSKLKTKFAGTLGYTAPEYAIHGQLSQKVDTYSYGIVVLEIVSGQKSTEIVKDNNNNSHEYLIKQAWELYEQGKHMELVDKNLEPNEYDLEEAKRVIEIGLMCTQASAAKRPKMSEVVVLLTSKAQLEHLQPSIPVFVESNLKPQGSTFYSDATVSDSIVSAR	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30218g00002	626	SMART	serkin_6	310	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30218g00002	626	ProSiteProfiles	Protein kinase domain profile.	310	597	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30218g00002	626	ProSitePatterns	Protein kinases ATP-binding region signature.	316	339	IPR017441	GO:0005524
	Stsc30218g00002	626	Gene3D	Transferase(Phosphotransferase) domain 1	387	596	-	-
	Stsc30218g00002	626	Gene3D	-	11	115	IPR038408	-
	Stsc30218g00002	626	Gene3D	-	125	223	IPR038408	-
	Stsc30218g00002	626	FunFam	Cysteine-rich receptor-like protein kinase 2	123	223	-	-
	Stsc30218g00002	626	Pfam	Salt stress response/antifungal	128	220	IPR002902	-
	Stsc30218g00002	626	Pfam	Salt stress response/antifungal	26	111	IPR002902	-
	Stsc30218g00002	626	SUPERFAMILY	Protein kinase-like (PK-like)	296	603	IPR011009	-
	Stsc30218g00002	626	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	66	604	-	-
	Stsc30218g00002	626	Gene3D	Phosphorylase Kinase; domain 1	274	386	-	-
	Stsc30218g00002	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Stsc30218g00002	626	Pfam	Protein kinase domain	311	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30218g00002	626	FunFam	Cysteine-rich receptor-like protein kinase 2	276	386	-	-
	Stsc30218g00002	626	ProSiteProfiles	Gnk2-homologous domain profile.	119	223	IPR002902	-
	Stsc30218g00002	626	ProSiteProfiles	Gnk2-homologous domain profile.	11	115	IPR002902	-
	Stsc30218g00002	626	CDD	STKc_IRAK	316	585	-	-
	Stsc30218g00002	626	FunFam	Cysteine-rich receptor-like protein kinase 2	387	592	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30218g00002	Stsc-Chr30218	4005	8542	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30218g00002	35	605	Receptor kinase-like Gene Family	AT1G70520	38.842	1.07e-122	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc30218g00002		Pkinase	1.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30218g00002	-		-	ahf:112723943	839.721