Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30217g00009 ATGGCAGAGCGTGTGCTCCTCACAAATCCTTCATTCACTTTACCATCTCAACCGTCTCCAACAACCACAATGGCTTCCACCGCCACTGCCGCAATCGCCGCCGCACGCATTATTCCCTCCGCCACTGCACTCTCCTCTTCATCTTCCCGCTCCTTCTTCTCCTCCTCTTCCACTTCTCGTTCCTCGCTCAAATGCCTCCACCTTCGCTCCTCTCCTCGCATTTCTCACCTCTTCGTCAATCAGCGAAGAACTGAGGTTCGTGTTTCGAGTGGAGGATATGCAACGGTTTCTGCTCCGAAGTCGTTTGCTTCTGATCCTGATCAGCTGAAGAGTGCTAGAGAAGATATCAGGGAGCTTCTAAGGACGAAATTCTGCCATCCGATTCTGATTCGCTTGGGATGGCATGATGCTGGTACCTACAATAAGAATATTGAGGAATGGCCACAGAGAGGTGGTGCTAATGGTAGTTTAAGATTTGAAGTTGAGCTGAAACATGCAGCCAATGCTGGACTTGTGAATGCATTGAAGCTTCTTCAGCCAATCAAAGACAAATACACTGGTGTGACATATGCAGACTTATTTCAGTTGGCTGGTGCTACTGCTGTTGAGGAAGCCGGAGGCCCAAAAATCCCTATGAAATATGGAAGAGTGGATGTCTCAGCACCTGAACAATGTCCTGAGGAAGGCAGACTTCCAGATGCTGGTCCTCCCTCACCGGCTGATCATTTGCGTCAAGTTTTCTATAGAATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCGCACACGCTGGGAAGGTCCAGACCTGAGCGTAGTGGCTGGGGCAAGCCTGAGACAAAATATACAAAAGATGGACCAGGAGCACCTGGAGGACAATCCTGGACAGTACAATGGTTGAAGTTTGACAACTCATACTTCAAGGACATCAAGGAAAAAAGGGATGAAGATTTATTGGTATTGCCAACAGATGCTGCTCTTTTTGAGGATCCATCCTTCAAGGTTTATGCTGAGAAGTATGCTGAAGATCAAGTAGCATTCTTCAATGATTATGCTGAAGCCCATGCCAAACTAAGCAACCTTGGTGCAAAATTTGATCCTCCAGAGGGCATAGTATTAGATTCTTCTCCAAAGCCACAAGCAGAGAAGTTTGAAGCGGCCAAGTACTCATCTGGAAAGAGAGAGCTATCTGATGCTATGAAGCAGAAGATTCGATCTGAGTATGAGGCAATTGGTGGAAGCCCAGATAAGCCCCTACAGTCAAACTATTTTCTTAATATCATAATTGTCATTGCTGTTTTGGCACTTTTGACATCACTGCTTGGAAATTAG 1335 0.4629 MAERVLLTNPSFTLPSQPSPTTTMASTATAAIAAARIIPSATALSSSSSRSFFSSSSTSRSSLKCLHLRSSPRISHLFVNQRRTEVRVSSGGYATVSAPKSFASDPDQLKSAREDIRELLRTKFCHPILIRLGWHDAGTYNKNIEEWPQRGGANGSLRFEVELKHAANAGLVNALKLLQPIKDKYTGVTYADLFQLAGATAVEEAGGPKIPMKYGRVDVSAPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKRDEDLLVLPTDAALFEDPSFKVYAEKYAEDQVAFFNDYAEAHAKLSNLGAKFDPPEGIVLDSSPKPQAEKFEAAKYSSGKRELSDAMKQKIRSEYEAIGGSPDKPLQSNYFLNIIIVIAVLALLTSLLGN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30217g00009 444 PRINTS Haem peroxidase superfamily signature 296 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Haem peroxidase superfamily signature 126 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Haem peroxidase superfamily signature 256 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Haem peroxidase superfamily signature 206 218 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Haem peroxidase superfamily signature 188 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 CDD ascorbate_peroxidase 97 367 - -
Stsc30217g00009 444 FunFam L-ascorbate peroxidase T, chloroplastic 234 357 - -
Stsc30217g00009 444 Gene3D Peroxidase, domain 2 234 357 - -
Stsc30217g00009 444 SUPERFAMILY Heme-dependent peroxidases 106 365 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 ProSitePatterns Peroxidases proximal heme-ligand signature. 256 266 IPR019793 -
Stsc30217g00009 444 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 112 236 - -
Stsc30217g00009 444 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 84 367 IPR044831 GO:0004601|GO:0034599
Stsc30217g00009 444 Gene3D - 112 365 - -
Stsc30217g00009 444 MobiDBLite consensus disorder prediction 263 291 - -
Stsc30217g00009 444 Pfam Peroxidase 113 344 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 ProSiteProfiles Plant heme peroxidase family profile. 188 413 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Plant ascorbate peroxidase signature 126 141 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Plant ascorbate peroxidase signature 187 205 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Plant ascorbate peroxidase signature 206 218 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc30217g00009 444 PRINTS Plant ascorbate peroxidase signature 105 125 IPR002207 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30217g00009 Stsc-Chr30217 88683 93706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30217g00009 188 365 Peroxidase AT4G17690 33.498 1.59e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30217g00009 K00434 - qsa:O6P43_015163 663.685