Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30217g00007 ATGGAGTCGTCACAGAAGAAGATGGCGGTGTTTGACGGAGAAGCGGCGTCGATGCTGGTGAAGGAGCTAAGAGGGAGCTTCGGTTCTGGAAAGACGAGAAGCTACGAGTGGAGAGTGTCGCAGGTGAAGGCACTGTTGAAGATGGTTACTGATAACGAGAAACAGATCATCGACGCTCTTCTCTCCGATCTCGCCAAGCCACCGCTCGAAACCGTCGTCTACGAGATTGGAATGTTTAAGAACTCATGTGAAGTCATATTGAAGGAATTGAAACAATGGATGAAGCCAGAGAAGGTTAAATCTTCACTATCAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGGGTTGTGCTAGTCATTTCTGCATGGAACTATCCAATTTTGTTGTCTCTTGATCCAGTTGTTGGAGCCATTGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAGATTGCTCCAGCATCTTCATCACTGCTGGCTAAACTGTTACAAGAGTACATGGATAACTCATGTGTCAGAGTTGTTGAAGGAGCAGTTGATGAAACAACCGCACTCTTGGATCAAAAGTGGGACAAGATTTTCTACACAGGTAATGGAAGAGTGGGACGCATAATCATGACTGCTGCTGCAAAACACCTTACACCTGTTGTTCTGGAGCTTGGAGGAAAATGTCCAGCAGTTGTTGATTCAGATGTCAATTTACAGGTAGCGGCTAGACGCTTAATTTCAGGCAAGTGGGGACTCAACAATGGACAAGCCTGTGTTTCTCCAGATTATGTTATCACAACAAAAGACTTTGCTCCTAAGTTGGTGGATACTCTGAAGACTGAGTTAGAGAATTTTTTCGGAAAGAATCCGTTGGAATCAAAAGATATCTCCAGAATTGTGAGTCACAACCACTTTACTCGCTTAGCGAAGCTCTTGGATGACGAGAAGGTTTCCGGCAAGATTGTTCATGGAGGCGAAAAAGATGAGAGCAAATTGAGGATTGCTCCCACTTTACTATTGGATGTTCCACATGATTCTCTGATCATGAGTGAAGAGATATTTGGTCCATTGCTTCCAATCATCACGGTGAATAAATTGGAAGAAAGTTTTGATTTCATCAATTCAAGAACAAAGCCTCTGGCTGCATATATATTTACAAACAACAAGAAGCTGAAGGAGCATTTTGTGATGAATGTTTCTGCAGGGGGCATGCTTATCAATGACATTGCCTTACATCTTGTTGTTCCCTCATTGCCATTTGGGGGAGTAGGAGACAGTGGAACGGGTTCATACCATGGAAGGTTCTCCTTTGAAGCTTTTACTCACAAGAAAGCAGTTCTTTCTCGTGGTTTTGGTGGAGACGCATCACTAAGGTATCCACCATACACAGACACAAAACTGAGAGTTATGAAGGCACTCATTGGTGGTAGCATTCTTAACATAATTCGTGCTCTTTTGGGAATGTCCTCCTAG 1470 0.4347 MESSQKKMAVFDGEAASMLVKELRGSFGSGKTRSYEWRVSQVKALLKMVTDNEKQIIDALLSDLAKPPLETVVYEIGMFKNSCEVILKELKQWMKPEKVKSSLSTFPSSAEIVPEPLGVVLVISAWNYPILLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLAKLLQEYMDNSCVRVVEGAVDETTALLDQKWDKIFYTGNGRVGRIIMTAAAKHLTPVVLELGGKCPAVVDSDVNLQVAARRLISGKWGLNNGQACVSPDYVITTKDFAPKLVDTLKTELENFFGKNPLESKDISRIVSHNHFTRLAKLLDDEKVSGKIVHGGEKDESKLRIAPTLLLDVPHDSLIMSEEIFGPLLPIITVNKLEESFDFINSRTKPLAAYIFTNNKKLKEHFVMNVSAGGMLINDIALHLVVPSLPFGGVGDSGTGSYHGRFSFEAFTHKKAVLSRGFGGDASLRYPPYTDTKLRVMKALIGGSILNIIRALLGMSS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30217g00007 489 FunFam Aldehyde dehydrogenase 225 425 - -
Stsc30217g00007 489 Pfam Aldehyde dehydrogenase family 27 445 IPR015590 GO:0016491
Stsc30217g00007 489 PIRSF ALDH 2 483 IPR012394 GO:0006081
Stsc30217g00007 489 SUPERFAMILY ALDH-like 19 450 IPR016161 GO:0016491
Stsc30217g00007 489 PANTHER ALDEHYDE DEHYDROGENASE 15 480 IPR012394 GO:0006081
Stsc30217g00007 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 225 425 IPR016163 GO:0016620
Stsc30217g00007 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 443 IPR016162 GO:0016491
Stsc30217g00007 489 FunFam Aldehyde dehydrogenase 24 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30217g00007 Stsc-Chr30217 55384 59899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30217g00007 5 488 Aldehyde Dehydrogenase Gene Family AT4G34240 64.876 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30217g00007 K00128 - gmx:100783726 798.119