Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30217g00004 ATGGAGTTATCTCAACTTGGTTTCCTTGAAGAACTTATGCTTGCTCCAAGAAAAGACACATGGACTAGTACTACTACTAATGATCTCTTCTCTGCTGCTTCTCCTTGGAACTATGACCCCTTTCTTGAAACCCCTTCTTTCCCCACTTCTTCTTCTTCTTCTTCCTTTCCTCCTCCTCCTCCTCCTTCTGCATTCTCACCGCTACCACCACCACCACCACCACCAGACCAAAGGTTCATCCTTGACTGCCCATTCACCACCTCATTCCCTTTCTCTGACGATGCCTTCACAATGCCTGACCTTGACTCCTCCTACACCACCACCAAGTATGAATATGAATACACTGAATATGATGATGCACCGCCGCCACCACCACCACTCACACACACCCATGAAGATGTCGACGATGATAATGACAACAATAACCCTTCACTGCTTGACGATGAAGATCCTGGGTTTCTTGGCTGCAAGGTTGAGGAACAAGCCGTGGTGGATCTTCAGGTGAATGTTCCTGTGGTCTTCAACATGGGTTTGTGTGGGGTTGGGGAGAAGAAGAGCAAGTCCAAGAAGCTAGAAGGCCAGCCATCAAAGAATCTTATGGCTGAAAGAAGGAGACGGAAGCGCCTCAATGACCGCCTCTCTATGCTAAGATCAATTGTCCCCAAGATCAGCAAGATGGACAGAACTTCCATTCTTGGAGATACCATAGACTACATGAAAGAGCTTTTGGAAAGGATTAACAAATTGCAAGAGGAACAAGTGGAGGAGGGCACAAGTCAGCAAAATCTCTTGGGGCTTTCTAAGGAACTCAAGCCAAATGAAACAATGGTTAGAAATTCACCCAAGGTAATGGATTTTGCACTACTTACTCACTGA 876 0.4623 MELSQLGFLEELMLAPRKDTWTSTTTNDLFSAASPWNYDPFLETPSFPTSSSSSSFPPPPPPSAFSPLPPPPPPPDQRFILDCPFTTSFPFSDDAFTMPDLDSSYTTTKYEYEYTEYDDAPPPPPPLTHTHEDVDDDNDNNNPSLLDDEDPGFLGCKVEEQAVVDLQVNVPVVFNMGLCGVGEKKSKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERINKLQEEQVEEGTSQQNLLGLSKELKPNETMVRNSPKVMDFALLTH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30217g00004 291 MobiDBLite consensus disorder prediction 52 79 - -
Stsc30217g00004 291 Pfam Helix-loop-helix DNA-binding domain 199 242 IPR011598 GO:0046983
Stsc30217g00004 291 Coils Coil 232 252 - -
Stsc30217g00004 291 Gene3D - 182 243 IPR036638 GO:0046983
Stsc30217g00004 291 MobiDBLite consensus disorder prediction 115 145 - -
Stsc30217g00004 291 SMART finulus 199 248 IPR011598 GO:0046983
Stsc30217g00004 291 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 93 282 - -
Stsc30217g00004 291 MobiDBLite consensus disorder prediction 44 79 - -
Stsc30217g00004 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Stsc30217g00004 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 255 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30217g00004 Stsc-Chr30217 33012 34924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30217g00004 174 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G65640 69.167 1.56e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30217g00004 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30217g00004 - - gmx:100806571 232.261