Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30217g00001 ATGTCTCCGCCCCTGCTGGTGGTTACCAAGGAGGAAGGGCTGAGCAACGCTTCAACTCTAGCGTCTGCATCTTCGCCGCAATCCTTGGACTGCTTCTCCCAAAATGGAGGGGCTTCCTTAAAAGAACGCAACTACTTGGGTTTGTCTGATTGCTCATCGGTGGACAGTTCAGCTGCCCCCGGCATGTCTGATGACAAAAAGGACAATCTCAATTTGAAGGCCACAGAATTGAGGCTTGGCCTTCCTGGATCCCAGTCTCCTGAAAGGGGTCCAGACATTTTCTCATTGACCTCAACAAAGCTTGATGAGAAGCCATTGTTCCCCTTGCTCCCTACTAAAGATGGAATCTGCTCATCCACCCAAAAGACTATAGTTTCAGGAAACAAAAGGGGTTTTGCTGATGCAATGGATGGATTCCCTGAGGCAAAGTTTCCCGGTACTGCAGCCATAAATGTGATGCTATCACCGAGACCTGCTGGAGTGCAGCCAACTGCAAAGAAGGAAATGCCAAGCAAGGTATTACAAGGACAGCCTGGTGCAGTGAATGGAACAGGAGGTACTGTTGGTGCTAGTTCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATTAGATCATTTAGGAAAAATTCATTGGCTACCACGTCAAAGAACAATGATGAAGTAGATGGAAAACCAAGCCTGGCGGCACTCTTTGTGAAGGTGAGCATGGATGGTGCTCCATATCTCAGGAAGGTTGATCTGCAGAATTACACGACATACCAGGAACTGTCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTATCTTAGGTCAGTGTGGTTCCCATGGGGCTTCAGGAAGAGAAATGATGAGTGAGAGCAAGCTGAAGGATCTCCTGCACGGTTCAGAATATGTACTTACTTATGAAGACAAGGATGGTGACTGGATGCTCGTAGGAGATGTACCATGGGAGATGTTCATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCTGTGGAAAAATCCAGGAGCAGAAGTTAG 1056 0.4792 MSPPLLVVTKEEGLSNASTLASASSPQSLDCFSQNGGASLKERNYLGLSDCSSVDSSAAPGMSDDKKDNLNLKATELRLGLPGSQSPERGPDIFSLTSTKLDEKPLFPLLPTKDGICSSTQKTIVSGNKRGFADAMDGFPEAKFPGTAAINVMLSPRPAGVQPTAKKEMPSKVLQGQPGAVNGTGGTVGASSPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPSLAALFVKVSMDGAPYLRKVDLQNYTTYQELSSALEKMFSCFILGQCGSHGASGREMMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAVEKSRSRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30217g00001 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 338 IPR003311 GO:0005634|GO:0006355
Stsc30217g00001 351 MobiDBLite consensus disorder prediction 177 194 - -
Stsc30217g00001 351 MobiDBLite consensus disorder prediction 159 197 - -
Stsc30217g00001 351 Gene3D - 227 345 - -
Stsc30217g00001 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Stsc30217g00001 351 FunFam Auxin-responsive protein 226 343 - -
Stsc30217g00001 351 SUPERFAMILY CAD & PB1 domains 231 332 - -
Stsc30217g00001 351 Pfam AUX/IAA family 75 342 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30217g00001 Stsc-Chr30217 5743 9892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30217g00001 245 331 B3 DNA Binding Superfamily AT1G19220 32.184 4.40e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30217g00001 AUX_IAA 4.1e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30217g00001 K14484 - gmx:100789251 553.903